SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38704

Length: 307 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene38704
AATGTGTTTTAGGTGAAACACCATGAGAAAAAAGTACAGGTTCTGCAAGGAAATTTGTTCCATCTGAGGATGCTGATCGGCTTCAATCAATTCTTTCTGATAACTTCACCAAGCCTGCATCACTGCTTGAAGGTGCAGCAGCTGTTAAACCCTTTCAGAGTGATCCAGATAAACAGGCAAGATTTGAACAATTCTTGAAAGATAGGTATCAAGGAGGTCTCCGCTCTAGCTATGTAGGAGACAACAGAATGACAGAAATAGAGCGTGCACAGGAGAGACTGGACTTTGAATCTGCGGTAGAGATGAA

Ace file of the UniGene sp_v2.0_unigene38704 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os06g0489200 protein n=2 Tax=Oryza sativa RepID=Q67VW6_ORYSJ	-	-	7.0e-21	53%
FL-Next	tr=Os06g0489200 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	53%
Blast2go	g patch domain-containing protein 1	-	-	2.17731e-24	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	2.17731e-24	66%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	2.17731e-24	66%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	2.17731e-24	66%
Blast2go	protein binding	GO:0005515	Molecular Function	2.17731e-24	66%
Blast2go	nucleus	GO:0005634	Cellular Component	2.17731e-24	66%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	G-patch domain	IPR000467	-	-
Sma3	Domain of unknown function DUF1604	IPR011666	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q67VW6

Fln msg: Distance to subject end: 398 aas, your sequence is shorter than subject: 101 - 984

Fln protein: CVLGETP*EKSTGSARKFVPSEDADRLQSILSDNFTKPASLLEGAAAVKPFQSDPDKQARFEQFLKDRYQGGLRSSYVGDNRMTEIERAQERLDFESAVEM

Protein Length: 102

Fln nts: AATGTGTTTTAGGTGAAACACCATGAGAAAAAAGTACAGGTTCTGCAAGGAAATTTGTTCCATCTGAGGATGCTGATCGGCTTCAATCAATTCTTTCTGATAACTTCACCAAGCCTGCATCACTGCTTGAAGGTGCAGCAGCTGTTAAACCCTTTCAGAGTGATCCAGATAAACAGGCAAGATTTGAACAATTCTTGAAAGATAGGTATCAAGGAGGTCTCCGCTCTAGCTATGTAGGAGACAACAGAATGACAGAAATAGAGCGTGCACAGGAGAGACTGGACTTTGAATCTGCGGTAGAGATGAA

Fln Alignment:

AllPineV4_c34641___VLGETP*EKSTGSARKFVPSEDADRLQSILSDNFTKPASLLEGAAAVKPFQSDPDKQARFEQFLKDRYQGGLR-SSYVGDNRMTEIERAQERLDFESAVE
Q67VW6_______________ILGERPLDRSTKSSSSSFPAKEAIQLQSNLADNFVKPISLDGLPEYEKPFRNDPAKQARFEQFLKDKYQGGLRPANLIPTSTMSDVDRARERLDFEAAAE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
188		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain