SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38694

Length: 374 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene38694
TAAAGCAGCGTTGAGAAAATTCCTTGGATTAGCTGTTTCTGATGCTAGGATCCCATTGGTTGGTTGTATTACTCGTATTGTTCCCCAGAAAGGTGTTCACCTTATTCGACATGCTATATATCGAACCCTAGAATGTGGAGGGCAATTTGTTCTTTTGGGCTTCAGTCCAATTCCACATATTCAGCGTGAATTTGAGGGCATTGCAAACCAATTTTGTGAGCATCCCTCGATACGGTTGATTCTGAAGTACGACGAGGTCCTTTCACATTACATTTATGGTGCATCAGATATATTCATCATCCCATCTATATTCGAGCCATGTTGGATTGACCCAGATGATAGCCATGAGATATGGCTCCATACCTGTAGCACGG

Ace file of the UniGene sp_v2.0_unigene38694

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	starch synthase-like protein [Arabidopsis thaliana] emb\|CAB78826.1\| starch synthase-like protein [Arabidopsis thaliana]	-	-	6.99949e-42	77%
FL-Next	tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	55%
Blast2go	soluble starch synthase iv-1	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	starch metabolic process	GO:0005982	Biological Process	0.0	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	IPR006137	-	-
Sma3	NADH-ubiquinone oxidoreductase, 20 Kd subunit	IPR006138	-	-
Sma3		IPR009756	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8YDY5

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 124 - 655

Fln protein: KAALRKFLGLAVSDARIPLVGCITRIVPQKGVHLIRHAIYRTLECGGQFVLLGFSPIPHIQREFEGIANQFCEHPSIRLILKYDEVLSHYIYGASDIFIIPSIFEPCWIDPDDSHEIWLHTCST

Protein Length: 125

Fln nts: TAAAGCAGCGTTGAGAAAATTCCTTGGATTAGCTGTTTCTGATGCTAGGATCCCATTGGTTGGTTGTATTACTCGTATTGTTCCCCAGAAAGGTGTTCACCTTATTCGACATGCTATATATCGAACCCTAGAATGTGGAGGGCAATTTGTTCTTTTGGGCTTCAGTCCAATTCCACATATTCAGCGTGAATTTGAGGGCATTGCAAACCAATTTTGTGAGCATCCCTCGATACGGTTGATTCTGAAGTACGACGAGGTCCTTTCACATTACATTTATGGTGCATCAGATATATTCATCATCCCATCTATATTCGAGCCATGTTGGATTGACCCAGATGATAGCCATGAGATATGGCTCCATACCTGTAGCACGG

Fln Alignment:

AllPineV4_c34629___PLVGCITRIVPQKGVHLIRHAIYRTLECGGQFVLLGFSPIPHIQREFEGIANQFCEHPSIRLILKYDEVLSHYIYGASDIFIIPSIFEPC
B8YDY5_______________PLVVCITRLVAQKGLHLIRYAINRVAELGGKFILLGTAPDGRVQEEFEYLSNQCKESNNVRLLLTYSEELSHMLYAAADIVLVPSMYEPC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
85	33	66			0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain