SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38591

Length: 539 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene38591
ATGGGAGGGGATAAATGATACCTGAATCCCTTCGGCCAGACATAGGGGATGTCCCGAGCACACTGGTGTGAAGAAATGGGTTTAAAAAAGGGACCGTGGACACCTGAGGAAGATCGAATACTTATCTCTTACATAAAAAAGAATGGCCATGGAAAGTGGCTTGCACTGCCGAAACAAGCAGGACTTAGCCGATGCGGGAAGAGTTGTCGACTGCGGTGGACAAACTATCTGAGACCCAACATAAAACGTGGGAACTTTAGTCTCAAGGAGGAACAGACTATCATTCAACTGCATCAAATCCTCGGAAACCGATGGTCAACTATTGCCTCGCACCTCCCTGGAAGAACAGACAATGAGATAAAGAATGTATGGAACACTCGTTTGAAAAAGCGCCTCCCGCAAACTGGTGTGGACCTAGCAAACTACGTTCCCAGAAAATGCAATATATCTTGCTTTGACGGCGCTGTGAGTGTCTGTGACAGTCATGAGAAGGATACCGATCATCAGTTCCAAAGCCATGGCTGCACGTCCGAATCAGC

Ace file of the UniGene sp_v2.0_unigene38591

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor DcMYB2 [Daucus carota]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	myb domain protein 107	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSI2

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 163 - 481

Fln protein: MSRAHWCEEMGLKKGPWTPEEDRILISYIKKNGHGKWLALPKQAGLSRCGKSCRLRWTNYLRPNIKRGNFSLKEEQTIIQLHQILGNRWSTIASHLPGRTDNEIKNVWNTRLKKRLPQTGVDLANYVPRKCNISCFDGAVSVCDSHEKDTDHQFQSHGCTSES

Protein Length: 164

Fln nts: ATGGGAGGGGATAAATGATACCTGAATCCCTTCGGCCAGACATAGGGG_-_ATGTCCCGAGCACACTGGTGTGAAGAAATGGGTTTAAAAAAGGGACCGTGGACACCTGAGGAAGATCGAATACTTATCTCTTACATAAAAAAGAATGGCCATGGAAAGTGGCTTGCACTGCCGAAACAAGCAGGACTTAGCCGATGCGGGAAGAGTTGTCGACTGCGGTGGACAAACTATCTGAGACCCAACATAAAACGTGGGAACTTTAGTCTCAAGGAGGAACAGACTATCATTCAACTGCATCAAATCCTCGGAAACCGATGGTCAACTATTGCCTCGCACCTCCCTGGAAGAACAGACAATGAGATAAAGAATGTATGGAACACTCGTTTGAAAAAGCGCCTCCCGCAAACTGGTGTGGACCTAGCAAACTACGTTCCCAGAAAATGCAATATATCTTGCTTTGACGGCGCTGTGAGTGTCTGTGACAGTCATGAGAAGGATACCGATCATCAGTTCCAAAGCCATGGCTGCACGTCCGAATCAGC

Fln Alignment:

AllPineV4_c34475___MSRAHWCEEMGLKKGPWTPEEDRILISYIKKNGHGKWLALPKQAGLSRCGKSCRLRWTNYLRPNIKRGNFSLKEEQTIIQLHQILGNRWSTIASHLPGRTDNEIKNVWNTRLKKRLPQTGVDLANYVPRKCNISCFDGAVSVCDSHEKDTDHQFQSHGCTSES
C0PSI2_______________MGRAPRCDEMGLKKGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFSLKEEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNVWNTHLKKRLLQIGVDPVTHAPRGYNVSSCYAAVSIRDHHGEQADHHLQSHGCTSES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain