SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38462

Length: 541 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene38462
CGTCGTGACCTTGGCTGTCACTTTTTCCGGAAGCTCCTCTTATAAAGCAGGTCAATCTTCAAGCAGACCATCCCAACCACCCCAAACTCCAGTTAGAGATTATCAAAATGGCTATGAGGGTTACATCAATTCTATTGCGGTAGGCACACTTGGTGTCCCACAGATCATGAATGCCTCATCGAGGTATGGGTGGGGCAATTTGAAATTCGTTTTCAGCTATGAACAATTGGCAATAGCAACAAATGGGTTCTCTACTGAAAATCAATTAGCAGAAGGTGGTTTTGGTTGGGTATACAGAGGGCAGCTACCAGATGGACAAGTGGTTGCAGTAAAACAACTCAAAGTGGGAGGTGGACAAGGGGAACTTGAGTTTCAAGCTGAAGTGGAGATCATTGGTAGGGTACATCATCGGAATCTGGTTTCTCTTGTTGGATATTGCATTACTGATAGTCGGCGACTTCTTATTTATGAATATGTTCCGAATGGGAGCCTTGAACAACATCTCCATGGAAAAGGAAGACCTGTGATGGATTGGGCAACG

Ace file of the UniGene sp_v2.0_unigene38462

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Musa balbisiana]	-	-	6.00036e-42	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	proline-rich receptor-like protein kinase perk10-like	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 298 aas, your sequence is shorter than subject: 180 - 656

Fln protein: VVTLAVTFSGSSSYKAGQSSSRPSQPPQTPVRDYQNGYEGYINSIAVGTLGVPQIMNASSRYGWGNLKFVFSYEQLAIATNGFSTENQLAEGGFGWVYRGQLPDGQVVAVKQLKVGGGQGELEFQAEVEIIGRVHHRNLVSLVGYCITDSRRLLIYEYVPNGSLEQHLHGKGRPVMDWAT

Protein Length: 181

Fln nts: CGTCGTGACCTTGGCTGTCACTTTTTCCGGAAGCTCCTCTTATAAAGCAGGTCAATCTTCAAGCAGACCATCCCAACCACCCCAAACTCCAGTTAGAGATTATCAAAATGGCTATGAGGGTTACATCAATTCTATTGCGGTAGGCACACTTGGTGTCCCACAGATCATGAATGCCTCATCGAGGTATGGGTGGGGCAATTTGAAATTCGTTTTCAGCTATGAACAATTGGCAATAGCAACAAATGGGTTCTCTACTGAAAATCAATTAGCAGAAGGTGGTTTTGGTTGGGTATACAGAGGGCAGCTACCAGATGGACAAGTGGTTGCAGTAAAACAACTCAAAGTGGGAGGTGGACAAGGGGAACTTGAGTTTCAAGCTGAAGTGGAGATCATTGGTAGGGTACATCATCGGAATCTGGTTTCTCTTGTTGGATATTGCATTACTGATAGTCGGCGACTTCTTATTTATGAATATGTTCCGAATGGGAGCCTTGAACAACATCTCCATGGAAAAGGAAGACCTGTGATGGATTGGGCAACG

Fln Alignment:

AllPineV4_c34268___FSYEQLAIATNGFSTENQLAEGGFGWVYRGQLPDGQVVAVKQLKVGGGQGELEFQAEVEIIGRVHHRNLVSLVGYCITDSRRLLIYEYVPNGSLEQHLHGKGRPVMDWAT
C0PRI9_______________FTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPNMEWPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain