SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38280

Length: 390 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene38280
CAAGTCAATCAAGCTCAGCTGTTGTGGCTATTGCCACAACAAGGATTGCAGTTCTTAATTTGCCATGCTCAACAAATATGAAGACTATGCCTGAAATGACCATCTCGGAGCCTAGAAAGAGAGGGGATTTTCTCTTAGTAATAGGTTCTCCATTTGGAGCTTTGTCTCCGTTGCATTTTTATAACAGCATTTCAGCGGGCATTGTTGCTAATTCATGGCCTCCTGCATCTAGCCAACCTACACTATTGATGGCTGATATTCGCTGCCTACCTGGAATGGAAGGTAGCCCTGTTTTTAGTGACCGAGCAAGTCTTGTTGGCATCCTGACAAGACCTCTACGACAACGTGGTGGTGGGGCAGAAGTTCAGCTTGTAATAACATGGGAAGCTT

Ace file of the UniGene sp_v2.0_unigene38280 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protease/hydrolase [Solanum lycopersicum]	-	-	2.0e-29	61%
FL-Next	sp=Glyoxysomal processing protease, glyoxysomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	protein	-	-	1.69713e-40	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	1.69713e-40	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VZD4

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 129 - 709

Fln protein: SQSSSAVVAIATTRIAVLNLPCSTNMKTMPEMTISEPRKRGDFLLVIGSPFGALSPLHFYNSISAGIVANSWPPASSQPTLLMADIRCLPGMEGSPVFSDRASLVGILTRPLRQRGGGAEVQLVITWEA

Protein Length: 130

Fln nts: CAAGTCAATCAAGCTCAGCTGTTGTGGCTATTGCCACAACAAGGATTGCAGTTCTTAATTTGCCATGCTCAACAAATATGAAGACTATGCCTGAAATGACCATCTCGGAGCCTAGAAAGAGAGGGGATTTTCTCTTAGTAATAGGTTCTCCATTTGGAGCTTTGTCTCCGTTGCATTTTTATAACAGCATTTCAGCGGGCATTGTTGCTAATTCATGGCCTCCTGCATCTAGCCAACCTACACTATTGATGGCTGATATTCGCTGCCTACCTGGAATGGAAGGTAGCCCTGTTTTTAGTGACCGAGCAAGTCTTGTTGGCATCCTGACAAGACCTCTACGACAACGTGGTGGTGGGGCAGAAGTTCAGCTTGTAATAACATGGGAAGCTT

Fln Alignment:

AllPineV4_c33969___PEMTISEPRKRGDFLLVIGSPFGALSPLHFYNSISAGIVANSWPPASSQPTLLMADIRCLPGMEGSPVFSDRASLVGILTRPLRQRGGGAEVQLVITWEA
Q8VZD4_______________PSMNFASSSSKGDTLVALGSPFGILSPVNFFNSVSTGSIANSYPSGSLKKSLMIADVRCLPGMEGAPVFAKNGHLIGILIRPLRQKNSGVEIQLVVPWGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain