SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38200

Length: 750 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene38200

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF819 domain containing protein	-	-	7.00649e-43	47%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	69%
Blast2go	protein	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF819	IPR008537	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
108			80	20	0.995493
185	25			75	0.996473
188	75		25		0.996473
191	75		25		0.996473
195	25		75		0.996473
217		25		75	0.996475
218	33			66	0.997452
228		20	80		0.995505
229	25		75		0.996473
230		20	80		0.9955
231	75			25	0.996473
232		25	75		0.996473
243		16		83	0.994512
247		16	83		0.994512
249		16	83		0.994512
250		83		16	0.994512
251	16	16			0.988813
307		42		57	1.0
345		42		57	1.0
483		25		75	1.0
486		75		25	1.0
596	76		23		1.0
686		14		85	0.993535
687	14		85		0.993535
694		66	33		1.0
734		83		16	0.994517
736	83	16			0.994517
737	83		16		0.994519
738		16		83	0.994517

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain