SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38169

Length: 366 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene38169
AGTAGATTTATTCAGTCTAGGATGTGTTCTTTTCTTTTGCATCACTGGAGGTAAACATCCATTTGGTGCAGAGTATGAACGGGATGGGAACATTGTGAATAGTCGATATGATCTCTTCCCGATTGAAGATATGCCTGAAGCTGCTGACCTTGTAACTCGCTTACTGGATAGTGCTGCTGATCAAAGGCCCAGGGCAGCTGAAGTTTTGCAGCATCCTTTCTTTTGGAGTTCAGAAAAGCGCCTGTCATTTCTTCGGGAAGCCAGTGATAGGGTGGAATTAGAGAATCGAGAGCAACAGTCTGACCTTTTGCAGGCATTGGAAAGCGTTGCATCTCTAGCTATTGGTGGGACATGGGATGGTAAATT

Ace file of the UniGene sp_v2.0_unigene38169

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endoribonuclease/protein kinase IRE1 [Arabidopsis thaliana]	-	-	3.0e-39	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%
Blast2go	protein inositol requiring 1-1	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	activation of signaling protein activity involved in unfolded protein response	GO:0006987	Biological Process	78%
Blast2go	RNA splicing, via endonucleolytic cleavage and ligation	GO:0000394	Biological Process	78%
Blast2go	endoribonuclease activity	GO:0004521	Molecular Function	78%
Blast2go	transferase activity	GO:0016740	Molecular Function	78%
Blast2go	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	PUG domain	IPR006567	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	KEN domain, ribonuclease activator	IPR010513	-	-
Sma3		IPR017442	-	-
Sma3	Pyrrolo-quinoline quinone beta-propeller repeat	IPR018391	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AX40

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 121 - 367

Fln protein: VDLFSLGCVLFFCITGGKHPFGAEYERDGNIVNSRYDLFPIEDMPEAADLVTRLLDSAADQRPRAAEVLQHPFFWSSEKRLSFLREASDRVELENREQQSDLLQALESVASLAIGGTWDGK

Protein Length: 122

Fln nts: AGTAGATTTATTCAGTCTAGGATGTGTTCTTTTCTTTTGCATCACTGGAGGTAAACATCCATTTGGTGCAGAGTATGAACGGGATGGGAACATTGTGAATAGTCGATATGATCTCTTCCCGATTGAAGATATGCCTGAAGCTGCTGACCTTGTAACTCGCTTACTGGATAGTGCTGCTGATCAAAGGCCCAGGGCAGCTGAAGTTTTGCAGCATCCTTTCTTTTGGAGTTCAGAAAAGCGCCTGTCATTTCTTCGGGAAGCCAGTGATAGGGTGGAATTAGAGAATCGAGAGCAACAGTCTGACCTTTTGCAGGCATTGGAAAGCGTTGCATCTCTAGCTATTGGTGGGACATGGGATGGTAAATT

Fln Alignment:

AllPineV4_c33806___VDLFSLGCVLFFCITGGKHPFGAEYERDGNIVNSRYDLFPIEDMPEAADLVTRLLDSAADQRPRAAEVLQHPFFWSSEKRLSFLREASDRVELENREQQSDLLQALESVASLAIGGTWDGK
A5AX40_______________VDLFSLGCVLFFCLTGGKHPYGDNLERDVNIVNNRKDLFLIENIPEAVDLFSLLLEPDPDLRPKAMDVLHHPFFWSSEMRLSFLRDVSDRVELEDRENESQLLKELESIGTLALNGKWDEK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
166	25		75		0.996473
197	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain