SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38124

Length: 470 nt

UniGene Fasta

>sp_v2.0_unigene38124
TAAAATGAAAAACTGGGGATGTGTCATTGATGAATATGTGTATGGTAGCCTTCTCCCTGGTTTGTTAAGAACAGGTCAAGTAAGTAAGGCTTTAGAAATGTTGGACAGTATGAGGGATGTAGGTTATTTACCTACTGTTCATATCTATACTGCTCTGATTATTCATTTCTTTAGGGAAAATAAATCAAAGCAAGCCTTATGGTTTCTTGAAGAAATGAAAAAAGCTGGTTGTGAACCAACCGTTGTTACATATACAGCATTAATTAGAGGGTATATGAATGAGGGCCTAATGTCTAATGCTTGGAATACTTTCAATCTCATGAAGGAGAAAGGGCCTGCTCCTGATTTTGAAACTTACTCTACATTCATTCACTGTCTTTGTAGGGCTGGTAAATCAAAAATGGCACTGGAACTACTCTATGAAATGATGGAAATTGGTATTCACCCAGTGCTGTGAACTTCAGGACTGT

Ace file of the UniGene sp_v2.0_unigene38124

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9FNG8.1\|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial; Flags: Precursor dbj\|BAB08962.1\| unnamed protein product [Arabidopsis t	-	-	2.0e-37	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 68 aas, your sequence is shorter than subject: 152 - 486

Fln protein: KMKNWGCVIDEYVYGSLLPGLLRTGQVSKALEMLDSMRDVGYLPTVHIYTALIIHFFRENKSKQALWFLEEMKKAGCEPTVVTYTALIRGYMNEGLMSNAWNTFNLMKEKGPAPDFETYSTFIHCLCRAGKSKMALELLYEMMEIGIHPVL*

Protein Length: 153

Fln nts: TAAAATGAAAAACTGGGGATGTGTCATTGATGAATATGTGTATGGTAGCCTTCTCCCTGGTTTGTTAAGAACAGGTCAAGTAAGTAAGGCTTTAGAAATGTTGGACAGTATGAGGGATGTAGGTTATTTACCTACTGTTCATATCTATACTGCTCTGATTATTCATTTCTTTAGGGAAAATAAATCAAAGCAAGCCTTATGGTTTCTTGAAGAAATGAAAAAAGCTGGTTGTGAACCAACCGTTGTTACATATACAGCATTAATTAGAGGGTATATGAATGAGGGCCTAATGTCTAATGCTTGGAATACTTTCAATCTCATGAAGGAGAAAGGGCCTGCTCCTGATTTTGAAACTTACTCTACATTCATTCACTGTCTTTGTAGGGCTGGTAAATCAAAAATGGCACTGGAACTACTCTATGAAATGATGGAAATTGGTATTCACCCAGTGCTGTGAACTTCAGGACTGT

Fln Alignment:

AllPineV4_c33738___KMKNWGCVIDEYVYGSLLPGLLRTGQVSKALEMLDSMRDVGYLPTVHIYTALIIHFFRENKSKQALWFLEEMKKAGCEPTVVTYTALIRGYMNEGLMSNAWNTFNLMKEKGPAPDFETYSTFIHCLCRAGKSKMALELLYEMMEIGIHP
D5AAH0_______________KMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain