SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38111

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene38111
ATTTGGATTGGCTTTGATTATTGATGCATTCCAGCCTAATAAAACTTAGGTTTGAACGCCACAAAACCTTGCATACCAGCGACATATACACTTAAATTTGTTATCTGTGGAGCATCAAGCTCCCCAGGAATTAAACATTACTCCCAGAACAATATAAAGGGGGAAACGCTTCACTAGCTCTTACCTCATAGCAATTGATTTCTTCTGCCTAGGGCTCGATGGACGCAGGAATTGTGAAATTTCTGGAAGAAGACGAGGATGAGCATATGCATTCGGGTGAAGCTGTGGAAGCATTCAGCGCTGCCCTAAACAGAGACATCGGGGGAATATCCACTGTAAGTTCAGTCTCGGCTTCAGCTGCGTTGTCCGAGTCGCACGGCAACA

Ace file of the UniGene sp_v2.0_unigene38111 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription initiation factor, putative n=1 Tax=Ricinus communis RepID=B9R722_RICCO	-	-	2.0e-07	77%
FL-Next	tr=Transcription initiation factor, putative; Ricinus communis (Castor bean).	-	-	0.0	77%
Blast2go	transcription initiation	-	-	1.12676e-09	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription initiation factor TFIID component TAF4	IPR007900	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9R722

Fln msg: Distance to subject end: 870 aas, your sequence is shorter than subject: 55 - 925

Fln protein: MDAGIVKFLEEDEDEHMHSGEAVEAFSAALNRDIGGISTVSSVSASAALSESHGN

Protein Length: 56

Fln nts: ATTTGGATTGGCTTTGATTATTGATGCATTCCAGCCTAATAAAACTTAGGTTTGAACGCCACAAAACCTTGCATACCAGCGACATATACACTTAAATTTGTTATCTGTGGAGCATCAAGCTCCCCAGGAATTAAACATTACTCCCAGAACAATATAAAGGGGGAAACGCTTCACTAGCTCTTACCTCATAGCAATTGATTTCTTCTGCCTAGGGCTCG_-_ATGGACGCAGGAATTGTGAAATTTCTGGAAGAAGACGAGGATGAGCATATGCATTCGGGTGAAGCTGTGGAAGCATTCAGCGCTGCCCTAAACAGAGACATCGGGGGAATATCCACTGTAAGTTCAGTCTCGGCTTCAGCTGCGTTGTCCGAGTCGCACGGCAACA

Fln Alignment:

AllPineV4_c33719___MDAGIVKFLEEDEDEHMHSGEAVEAFSAALNRDIGG
B9R722_______________MDPSIMKLLEEDEDESMHSGADVEAFQAALNRDIGG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
176	25		75		0.996473
250	33			66	0.997452
251			33	66	0.997452
253	75		25		0.996474
255		25		75	0.996473
256	25			75	0.996473
257		75	25		0.996473
260	33		66		0.997476
261	33		66		0.997476
265			66	33	0.997467
267	33			66	0.997458
268		33		66	0.997458
271		33		66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain