SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37988

Length: 501 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene37988
AGCCAGCGGGGTTTGTTGAACAGTGCAGGGGCGAATGCTGCGAGAGGAGGGTTGGGTTTCCTGCAGCACAAGGAGGGCCAGGCGGATGAGGAGGGCTGCTGTGCCCGCGTGAATAGCCACCTGCATTCTTTTTGTTGCATAGGAGTGCAGGGGCAAATGCCTTCTTTGCTGTAGGAGGGTCGCATTTGCACCAAACTGCCTAATTTACCAACTGTCGGTAGATTTGCAGCCTTCCGCCTCTGAGGTTTTCAGATTGGTAGGCTGGAAGACATACGGTCTCAAACACTTCGTGGAATTATTGCTGTGCAAAAGTGTTTAAGAGGTTATCAGGTCTGCAGTTATTTCAAGGAACTAAAGAAAGCTACAATTTTGGTTCAATCATGGCTGAAGGGTAAAAGAGTGAGGAAGGAATATGGGGTGTTGAAGCATAGAAGCAAGGAAGTAGTCACTATACAAAAGGATGTGAAATTCATGATTGGACAGACAACAATACCTTACAGC

Ace file of the UniGene sp_v2.0_unigene37988

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unconventional myosin n=1 Tax=Helianthus annuus RepID=O24515_HELAN	-	-	1.0e-13	41%
FL-Next	tr=Unconventional myosin; Helianthus annuus (Common sunflower).	-	-	0.0	41%
Blast2go	myosin-like protein	-	-	6.95546e-15	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	6.95546e-15	60%
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	6.95546e-15	60%
Blast2go	positive regulation of programmed cell death	GO:0043068	Biological Process	6.95546e-15	60%
Blast2go	response to cold	GO:0009409	Biological Process	6.95546e-15	60%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	6.95546e-15	60%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	6.95546e-15	60%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	6.95546e-15	60%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	6.95546e-15	60%
Blast2go	apoplast	GO:0048046	Cellular Component	6.95546e-15	60%
Blast2go	stromule	GO:0010319	Cellular Component	6.95546e-15	60%
Blast2go	phragmoplast	GO:0009524	Cellular Component	6.95546e-15	60%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	6.95546e-15	60%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	6.95546e-15	60%
Blast2go	cell plate	GO:0009504	Cellular Component	6.95546e-15	60%
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.95546e-15	60%
Blast2go	mitochondrion	GO:0005739	Cellular Component	6.95546e-15	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: O24515

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 252 aas, your sequence is shorter than subject: 167 - 1120

Fln protein: SQRGLLNSAGANAARGGLGFLQHKEGQADEEGCCARVNSHLHSFCCIGVQGQMPSLL*EGRICTKLPNLPTVGRFAAFRL*GFQIGRLEDIRSQTLRGIIAVQKCLRGYQVCSYFKELKKATILVQSWLKGKRVRKEYGVLKHRSKEVVTIQKDVKFMIGQTTIPYS

Protein Length: 168

Fln nts: AGCCAGCGGGGTTTGTTGAACAGTGCAGGGGCGAATGCTGCGAGAGGAGGGTTGGGTTTCCTGCAGCACAAGGAGGGCCAGGCGGATGAGGAGGGCTGCTGTGCCCGCGTGAATAGCCACCTGCATTCTTTTTGTTGCATAGGAGTGCAGGGGCAAATGCCTTCTTTGCTGTAGGAGGGTCGCATTTGCACCAAACTGCCTAATTTACCAACTGTCGGTAGATTTGCAGCCTTCCGCCTCTGAGGTTTTCAGATTGGTAGGCTGGAAGACATACGGTCTCAAACACTTCGTGGAATTATTGCTGTGCAAAAGTGTTTAAGAGGTTATCAGGTCTGCAGTTATTTCAAGGAACTAAAGAAAGCTACAATTTTGGTTCAATCATGGCTGAAGGGTAAAAGAGTGAGGAAGGAATATGGGGTGTTGAAGCATAGAAGCAAGGAAGTAGTCACTATACAAAAGGATGTGAAATTCATGATTGGACAGACAACAATACCTTACAGC

Fln Alignment:

AllPineV4_c33542___LPNLPTVGRFAAFRL*GFQIGRLEDIRSQTLRGIIAVQKCLRGYQVCSYFKELKKATILVQSWLKGKRVRKEYGVLKHRSKEVVTIQKDVKFMIGQ
O24515_______________LPEMYQIGYTKLFFRTG-QIGKLEDTRNRTLNGILRVQSCFRGHKARQYMKELKRGIFNLQAFARGEKTRKEFAILVHRHRAAVHIQKHIKAKISK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
120		75		25	0.996473
179	25		75		0.996473
189		66		33	0.997452
238		80	20		0.995496
245		25	75		0.996477
246		25	75		0.996477
249			25	75	0.99649
250			25	75	0.99649
252	66			33	0.997452
257		33		66	0.997452
259		33	66		0.997452
260	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain