SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37856

Length: 419 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene37856
CGTCGTGACCTTGGCTGTCACTCATTGTTCGTACCACTGAAGAGAATGCATCTTCAAATGGTGATGATAGGGAACGGGTCAGGAAGGCTATGATGACGTTTGATGCATTGCGGCGCAACCTGATGAATGAAGATGAATTCTGTAAGGAATTAGGTGGAGCAGCAAGGCGTCCTGACTTAAGGGCAGGGACCATAATGATGGACAAAGGGCAGTGGATAAACCGAGGTAGAAGATTTATAGGTCCAGTCCCGGGTGTTCATGTGGGCGATCATTTTTATTTCCGAATGGAGCTCTGTGTAATTGGTTTACATGGCCCGAGTCAGGCTGGTATTGATTTCATTACTGCTAAAAACAATCAATGGAATGAGCCTGTGGCAATCAGTATAATTTCTTCAGGTGGTTATGAAGATGAGGATGAT

Ace file of the UniGene sp_v2.0_unigene37856

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana] ref\|NP_001031625.1\| putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana] sp\|Q9T0G7.1\|SUVH9_ARATH RecName: Full=Probabl	-	-	2.0e-28	47%
FL-Next	sp=Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Blast2go	histone-lysine n- h3 lysine-9 specific suvh9	-	-	4.2498e-35	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	4.2498e-35	65%
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	4.2498e-35	65%
Blast2go	histone methylation	GO:0016571	Biological Process	4.2498e-35	65%
Blast2go	nuclear heterochromatin	GO:0005720	Cellular Component	4.2498e-35	65%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T0G7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 386 aas, your sequence is shorter than subject: 139 - 650

Fln protein: S*PWLSLIVRTTEENASSNGDDRERVRKAMMTFDALRRNLMNEDEFCKELGGAARRPDLRAGTIMMDKGQWINRGRRFIGPVPGVHVGDHFYFRMELCVIGLHGPSQAGIDFITAKNNQWNEPVAISIISSGGYEDEDD

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCGTACCACTGAAGAGAATGCATCTTCAAATGGTGATGATAGGGAACGGGTCAGGAAGGCTATGATGACGTTTGATGCATTGCGGCGCAACCTGATGAATGAAGATGAATTCTGTAAGGAATTAGGTGGAGCAGCAAGGCGTCCTGACTTAAGGGCAGGGACCATAATGATGGACAAAGGGCAGTGGATAAACCGAGGTAGAAGATTTATAGGTCCAGTCCCGGGTGTTCATGTGGGCGATCATTTTTATTTCCGAATGGAGCTCTGTGTAATTGGTTTACATGGCCCGAGTCAGGCTGGTATTGATTTCATTACTGCTAAAAACAATCAATGGAATGAGCCTGTGGCAATCAGTATAATTTCTTCAGGTGGTTATGAAGATGAGGATGAT

Fln Alignment:

AllPineV4_c33343___PWLSLIVRTTEENASSNGDDRERVRKAMMTFDALRRNLMNEDEFCKELGGAARRPDLRAG---TIMMDKGQWINRGRRFIGPVPGVHVGDHFYFRMELCVIGLHGPSQAGIDFITAKNNQWNEPVAISIISSGGYEDEDD
Q9T0G7_______________PRSSELVRITDVGPESERQFREHVRKTRMIYDSLRMFLMMEEAKRNGVGGRRARADGKAGKAGSMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGGYEDDDD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
194	75		25		0.996473
195	75		25		0.996473
196			25	75	0.996473
247		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain