SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37797

Length: 430 nt

UniGene Fasta

>sp_v2.0_unigene37797
GCAGCTGGCCGTGGGGCAATGTGCAACATTATTTGCACACAACCTAGGCGTATATCTGCTATGTCTGTTGCAGAAAGGGTTGCTGCAGAAAGAGGGGAACAATTGGGTGAATCAGTTGGTTACAAAGTCCGCTTAGAGGGCATGAGAGGGAAAAACACACGTTTGCTTTTCTGTACAACTGGTATTTTGCTCAGAAGATTGCTAGTGGATAGGGAATTAAAAGGTGCAACCCATGTAATTGTGGACGAAATTCATGAGCGTGGCATGAATGAAGATTTTCTTCTGATTGTTTTGAAAGATATTCTTCCTCGGCGCTCAGACCTCAAGTTAATTCTTATGAGTGCCACCCTGAATGCGGAGCTATTTCCTCTTTCTTTGGTGGAGCACCCAAAATTCATATACCAGGATTTACACACCCAGTAAGAGCACA

Ace file of the UniGene sp_v2.0_unigene37797

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH	-	-	88%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	probable atp-dependent rna helicase dhx36-like	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	94%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Chalcone isomerase, subgroup	IPR003466	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38953

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 472 aas, your sequence is shorter than subject: 141 - 1168

Fln protein: AAGRGAMCNIICTQPRRISAMSVAERVAAERGEQLGESVGYKVRLEGMRGKNTRLLFCTTGILLRRLLVDRELKGATHVIVDEIHERGMNEDFLLIVLKDILPRRSDLKLILMSATLNAELFPLSLVEHPKFIYQDLHTQ*

Protein Length: 142

Fln nts: GCAGCTGGCCGTGGGGCAATGTGCAACATTATTTGCACACAACCTAGGCGTATATCTGCTATGTCTGTTGCAGAAAGGGTTGCTGCAGAAAGAGGGGAACAATTGGGTGAATCAGTTGGTTACAAAGTCCGCTTAGAGGGCATGAGAGGGAAAAACACACGTTTGCTTTTCTGTACAACTGGTATTTTGCTCAGAAGATTGCTAGTGGATAGGGAATTAAAAGGTGCAACCCATGTAATTGTGGACGAAATTCATGAGCGTGGCATGAATGAAGATTTTCTTCTGATTGTTTTGAAAGATATTCTTCCTCGGCGCTCAGACCTCAAGTTAATTCTTATGAGTGCCACCCTGAATGCGGAGCTATTTCCTCTTTCTTTGGTGGAGCACCCAAAATTCATATACCAGGATTTACACACCCAGTAAGAGCACA

Fln Alignment:

AllPineV4_c33259___AGRGAMCNIICTQPRRISAMSVAERVAAERGEQLGESVGYKVRLEGMRGKNTRLLFCTTGILLRRLLVDRELKGATHVIVDEIHERGMNEDFLLIVLKDILPRRSDLKLILMSATLNAELF
Q38953_______________AGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
160	66		33		0.997453
192	25		75		0.996476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain