SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37785

Length: 1173 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene37785

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5-methyltetrahydrofolate:homocysteine methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SFH3_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	selenocysteine methyltransferase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.1.1.1-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	S-methylmethionine cycle	GO:0033528	Biological Process	81%
Blast2go	response to selenium ion	GO:0010269	Biological Process	81%
Blast2go	methionine biosynthetic process	GO:0009086	Biological Process	81%
Blast2go	methylation	GO:0032259	Biological Process	81%
Blast2go	selenocysteine methyltransferase activity	GO:0016205	Molecular Function	81%
Blast2go	homocysteine S-methyltransferase activity	GO:0008898	Molecular Function	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Homocysteine S-methyltransferase	IPR003726	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRQ1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 151 aas, your sequence is shorter than subject: 187 - 348

Fln protein: MKFGSGERMKVLEEFLREVGGFGVIDGGLATQLESHGADLNDPLWSGRCLIESPHLIQEVHQEYLEAGAEIIITASYQATIQGFESKGFSVTEGEALLRKSVEIACEAREQFWKKCAEILNGSVDDAQIPKVRPILVAASVGSYGAYLADGSEYSGDYGPGMTVQALKDFHRRRVQVLAESGAEFN*

Protein Length: 188

Fln nts: ATTGGGATTGTCTTTGGATTAGGATGCAGCTGAAATCCCTATTGGGGGCTAGTGACAGGTGACGAAACACCACGCCATCTCCATACAGCCTGCGAAATGGGAGCGAGCAAGCAGGGAGTGACAGTAACAACAACATCCTATTCGAATAAGTGTTGTTGGATGCATCTGGAATCCATCCTTATCAATGGAATTTAGTGGACGCTAGTGGGGGGTGACAACACACCAGGCATGTACACACACAGCGCATGCAGCACCAACAGGTTACAGCCTTCAAATCTGCAGGTCCTGAAAATTAGATATGGATATGACAAATGGCATCTCAGTCTTTATCATATACAGATAAAGGCTATGGGAATAAGCACACTTCTTTGTTTAATGAAGTATTTTCACTTTTTTGGGTCATCCCCCTACTTATTTCTCTGAAGCCCTAGTTATCTCTCAGTACTAGGCTCTGAACGCTCTCCCGTGGTCTTCCCTAACATTGGCACTGATACAATTTTGGCTTGGAGTACAGTATTGGGTTTTTGTCTGCAGAAATCTGTGATCAGGGGAACCTGGTTGTTTGCAGTTTTTGGTAAGCA_-_ATGAAGTTCGGAAGTGGAGAAAGGATGAAGGTGTTGGAAGAGTTCCTGCGGGAGGTGGGAGGCTTCGGTGTTATCGATGGAGGCCTCGCCACGCAGTTAGAGTCCCATGGTGCAGATCTCAATGATCCTTTATGGAGCGGCAGGTGCCTGATTGAATCTCCACATCTCATCCAGGAGGTTCACCAAGAATATCTTGAAGCTGGAGCAGAGATCATAATCACAGCATCATACCAAGCAACTATTCAAGGCTTTGAATCAAAAGGCTTTTCAGTAACAGAGGGAGAAGCTTTGTTGCGCAAGAGTGTCGAGATTGCTTGTGAAGCACGTGAACAGTTTTGGAAAAAATGTGCTGAAATCTTAAATGGTAGTGTTGATGATGCCCAAATTCCAAAAGTTAGACCTATATTAGTGGCAGCCTCTGTGGGAAGTTATGGGGCTTACCTGGCAGATGGTTCTGAATACAGTGGTGATTATGGACCTGGTATGACAGTACAGGCTTTAAAAGATTTCCATCGAAGACGTGTGCAAGTTCTTGCAGAATCAGGAGCTGAATTTAATTAGCTTTTGAAACAATACCAAATAAGTTGGAGGC

Fln Alignment:

AllPineV4_c33241___MKFGSGERMKVLEEFLREVGGFGVIDGGLATQLESHGADLNDPLWSGRCLIESPHLIQEVHQEYLEAGAEIIITASYQATIQGFESKGFSVTEGEALLRKSVEIACEAREQFWKKCAEILNGSVDDAQIPKVRPILVAASVGSYGAYLADGSEYSGDYGPGMTVQALKDFHRRRVQVLAESGAE
C0PRQ1_______________MKFGSGERMKVLEEFLQQVGGFGVIDGGLATQLESHGADLNDPLWSGRCLIESPHLIQKVHQEYLEAGAEIIITASYQATIQGFESRGLSITEGEALLRRSVEIACEARDQFWKKCAESLNGSVDDAQIPKVRPILVAASVGSYGAYLADGSEYSGDYGPGMTVHTLKDFHRGRVQVLADSGAD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
291	66		33		0.997476
306			25	75	0.996475
401			75	25	0.996473
501	20			80	0.995493
502	20			80	0.995493
505			83	16	0.994512
537	16		83		0.994512
538	83		16		0.994512
593	25			75	0.996473
619	25			75	0.996473
635	25		75		0.996473
696			16	83	0.994512
896		16		83	0.994512
1007	33			66	0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain