SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37784

Length: 2162 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene37784
CGTCGTGACCTTGGCTGTCACTCATCTTCTTCTTCTGGTCCCAATCGCCCTTCCACCCCGCCCACGCAGAGCCGAGCATGGAATCGAGTCGCACCAGTCGGTGGAGGGGGCGGCGCTGGTGGCTGGTCCCGTGGCAGCGGTGGATGGGGAAATAACGCCAGCATCAATAATAACAGATCTGGTGGTTGGGGGCGTGAACGCGAAGCGAATCCGTTCGCGGAGGAGGATGGAAGTGAGAATACTGCTGAGGTGTTTGACCAGGAGAATACGGGGATCAATTTTGATGCGTACGAGGACATTCCCGTTGAGACGAGTGGTGACGCCGTTCCTCCTCCGGTTAATACTTTTTCTGAGATCGACTTGGGGGAGAGTCTGAATAACAATCTGCGAAGGTGTAATTATACGAAACCCACTCCTGTCCAGAAGTACGCTATACCTATTTCGCTCGCGGGTCGGGATTTGATGGCGTGTGCTCAGACTGGATCCGGGAAGACGGCCGCTTTCTGTTTTCCAATAATTGCAGGGATTTTGCGGGGGAGCCACCCTCAGGCTCCTCGGGGCGTCCGAAAGGCGTTCCCTTTGGCGCTCATTCTCTCACCCACCAGGGAATTGGCTTCTCAGATACATCTAGAAGCTAGAAAATTTTCTTATCAAACTGGTCTTAAGGCACTGGTAGCTTATGGAGGCACCCCTATAAATCAACAGTTCCGTGAATTGGAAAGGGGTGTTGACATTCTTGTTGCAACTCCTGGACGACTTGGGGACCTTCTTGAAAGGGGGAGGCTGTCATTATCTATGATACAGTATTTGGCCTTAGACGAGGCTGATCGCATGCTTGACATGGGTTTTGAACCCCAAATTCGTAAAATTGTCCAAGAAACAGATATGCCTCCAGCTGGCAGAAGGCAGACCATGCTCTTCAGTGCTACTTTTCCAAAGGAGATACAGAGGTTGGCTGTGGATTTTCTTTCAAATTATATATTTCTGGCAGTTGGAAGGGTTGGTTCCAGCACAGATCTGATTGTACAAAGAGTAGAATTTGTTCCTGATGCTGATAAACGGAGCCATTTAATGGATCTTATTCATGCTCAGAAAGCTGAAGGTACTCATGGAAAGCAATCTTTGACCTTAGTCTTTGTGGAGACGAAGAGGGGAGCTGATGCATTGGAATATTGGCTATCGTCAAATGGGTTTCCTGCAACAAGTATTCATGGAGATAAATCTCAACAGGAGCGCGAGCAATCTCTGAGAAATTTCAAGAGTGGGGCTGCACCTATTTTAGTTGCCACAGATGTGGCTGCACGTGGACTTGATATTCCACATGTGGCGCATGTAATTAATTTTGATTTGCCAAATGATATTGATGACTATGTCCACCGCATAGGGCGTACAGGTCGTGCTGGTAAATCAGGGTTGGCAACTGCCTTTTTTAATGAAAGTAACCTTTCTCTAGCAAGGCCGTTGTCTGAACTCATGCAAGAAGCAAACCAAGAGGTTCCAACATGGCTATCAAATTATGCTGCAAGGTTTGCATATGGTGGTGGAGGTCGTAATCGTCGATCTGGTGGCGGAAGATTCGGTGCTCGTGATTATCGTAGAGATGTTAATAGGGGTGGCGGGGATCGTCCTGGAGGGGCATATGGTAGCATGGGAAATTCTTATGGTGCTTCAGCAGGATATGGTGGTGGGTATGGACGCGAGACTAGCGCATGGGATTGAAGTTATCCCTTCCCATGTGAATTTTTAATCAACTGTCTATATGTTCAGCTGGGTAATATCCAGCGCCATGTCTTTGTTGCAGCTTTTGCCTCGACGGTCCATGTGGGTAGCTTTTGCGGCATGGTAAGTTTTGGGCTTCTGGCAAATAACACTGGGCTTTTCAACAGCCCATAGAGAGATATTTGACTCACTAATGTATCATTGGTGTCCAGAGTTTTCTGCTATATTTGCTTTTATCCGGCGAGGTGTATATTAGTAGGCAGCTGGCAATTTACATGGAGTAAAATCCTAGTTTGGTAGACATAGCTGAAAGTAGTACTAGATTAGATTTCAGCTGCTGATTCTTGTGCATTGGTAGGTTGCTTTGTTTCTGACATTTGTGCATGAGACAGACTGAAAAAGGGCCAATTTTTAATGCAAGATGGCCAATTTATGATACAGAG

Ace file of the UniGene sp_v2.0_unigene37784 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 37 n=2 Tax=Oryza sativa Japonica Group RepID=RH37_ORYSJ	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	dead-box atp-dependent rna helicase 37-like	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: your sequence is shorter than subject: 573 - 593

Fln protein: RRDLGCHSSSSSGPNRPSTPPTQSRAWNRVAPVGGGGGAGGWSRGSGGWGNNASINNNRSGGWGREREANPFAEEDGSENTAEVFDQENTGINFDAYEDIPVETSGDAVPPPVNTFSEIDLGESLNNNLRRCNYTKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIIAGILRGSHPQAPRGVRKAFPLALILSPTRELASQIHLEARKFSYQTGLKALVAYGGTPINQQFRELERGVDILVATPGRLGDLLERGRLSLSMIQYLALDEADRMLDMGFEPQIRKIVQETDMPPAGRRQTMLFSATFPKEIQRLAVDFLSNYIFLAVGRVGSSTDLIVQRVEFVPDADKRSHLMDLIHAQKAEGTHGKQSLTLVFVETKRGADALEYWLSSNGFPATSIHGDKSQQEREQSLRNFKSGAAPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNLSLARPLSELMQEANQEVPTWLSNYAARFAYGGGGRNRRSGGGRFGARDYRRDVNRGGGDRPGGAYGSMGNSYGASAGYGGGYGRETSAWD*

Protein Length: 574

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCTTCTTCTGGTCCCAATCGCCCTTCCACCCCGCCCACGCAGAGCCGAGCATGGAATCGAGTCGCACCAGTCGGTGGAGGGGGCGGCGCTGGTGGCTGGTCCCGTGGCAGCGGTGGATGGGGAAATAACGCCAGCATCAATAATAACAGATCTGGTGGTTGGGGGCGTGAACGCGAAGCGAATCCGTTCGCGGAGGAGGATGGAAGTGAGAATACTGCTGAGGTGTTTGACCAGGAGAATACGGGGATCAATTTTGATGCGTACGAGGACATTCCCGTTGAGACGAGTGGTGACGCCGTTCCTCCTCCGGTTAATACTTTTTCTGAGATCGACTTGGGGGAGAGTCTGAATAACAATCTGCGAAGGTGTAATTATACGAAACCCACTCCTGTCCAGAAGTACGCTATACCTATTTCGCTCGCGGGTCGGGATTTGATGGCGTGTGCTCAGACTGGATCCGGGAAGACGGCCGCTTTCTGTTTTCCAATAATTGCAGGGATTTTGCGGGGGAGCCACCCTCAGGCTCCTCGGGGCGTCCGAAAGGCGTTCCCTTTGGCGCTCATTCTCTCACCCACCAGGGAATTGGCTTCTCAGATACATCTAGAAGCTAGAAAATTTTCTTATCAAACTGGTCTTAAGGCACTGGTAGCTTATGGAGGCACCCCTATAAATCAACAGTTCCGTGAATTGGAAAGGGGTGTTGACATTCTTGTTGCAACTCCTGGACGACTTGGGGACCTTCTTGAAAGGGGGAGGCTGTCATTATCTATGATACAGTATTTGGCCTTAGACGAGGCTGATCGCATGCTTGACATGGGTTTTGAACCCCAAATTCGTAAAATTGTCCAAGAAACAGATATGCCTCCAGCTGGCAGAAGGCAGACCATGCTCTTCAGTGCTACTTTTCCAAAGGAGATACAGAGGTTGGCTGTGGATTTTCTTTCAAATTATATATTTCTGGCAGTTGGAAGGGTTGGTTCCAGCACAGATCTGATTGTACAAAGAGTAGAATTTGTTCCTGATGCTGATAAACGGAGCCATTTAATGGATCTTATTCATGCTCAGAAAGCTGAAGGTACTCATGGAAAGCAATCTTTGACCTTAGTCTTTGTGGAGACGAAGAGGGGAGCTGATGCATTGGAATATTGGCTATCGTCAAATGGGTTTCCTGCAACAAGTATTCATGGAGATAAATCTCAACAGGAGCGCGAGCAATCTCTGAGAAATTTCAAGAGTGGGGCTGCACCTATTTTAGTTGCCACAGATGTGGCTGCACGTGGACTTGATATTCCACATGTGGCGCATGTAATTAATTTTGATTTGCCAAATGATATTGATGACTATGTCCACCGCATAGGGCGTACAGGTCGTGCTGGTAAATCAGGGTTGGCAACTGCCTTTTTTAATGAAAGTAACCTTTCTCTAGCAAGGCCGTTGTCTGAACTCATGCAAGAAGCAAACCAAGAGGTTCCAACATGGCTATCAAATTATGCTGCAAGGTTTGCATATGGTGGTGGAGGTCGTAATCGTCGATCTGGTGGCGGAAGATTCGGTGCTCGTGATTATCGTAGAGATGTTAATAGGGGTGGCGGGGATCGTCCTGGAGGGGCATATGGTAGCATGGGAAATTCTTATGGTGCTTCAGCAGGATATGGTGGTGGGTATGGACGCGAGACTAGCGCATGGGATTGA___AGTTATCCCTTCCCATGTGAATTTTTAATCAACTGTCTATATGTTCAGCTGGGTAATATCCAGCGCCATGTCTTTGTTGCAGCTTTTGCCTCGACGGTCCATGTGGGTAGCTTTTGCGGCATGGTAAGTTTTGGGCTTCTGGCAAATAACACTGGGCTTTTCAACAGCCCATAGAGAGATATTTGACTCACTAATGTATCATTGGTGTCCAGAGTTTTCTGCTATATTTGCTTTTATCCGGCGAGGTGTATATTAGTAGGCAGCTGGCAATTTACATGGAGTAAAATCCTAGTTTGGTAGACATAGCTGAAAGTAGTACTAGATTAGATTTCAGCTGCTGATTCTTGTGCATTGGTAGGTTGCTTTGTTTCTGACATTTGTGCATGAGACAGACTGAAAAAGGGCCAATTTTTAATGCAAGATGGCCAATTTATGATACAGAG

Fln Alignment:

AllPineV4_c33240___VETSGDAVPPPVNTFSEIDLGESLNNNLRRCNYTKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIIAGILRGSHPQAPRGVRKAFPLALILSPTRELASQIHLEARKFSYQTGLKALVAYGGTPINQQFRELERGVDILVATPXXXXXXXXXXXXXLSMIQYLALDEADRMLDMGFEPQIRKIVQETDMPPAGRRQTMLFSATFPKEIQRLAVDFLSNYIFLAVGRVG-SSTDLIVQRVEFVPDADKRSHLMDLIHAQKAEGTHGKQSLTLVFVETKRGADALEYWLSSNGFPATSIHGDKSQQEREQSLRNFKSGAAPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNLSLARPLSELMQEANQEV
C0PQ26_______________ITVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPHLAHGDG-----PIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKII--TQIRPD--RQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLE-EIMDG-----SRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1741		66	33		0.997452
1943	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2127	2138	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain