SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37759

Length: 533 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene37759
TATCGCCATGACAAGCGTGTTTATCTGGGAGCACTTAAATTTGTACCTCATGCAGTCTACAAACTTCTTGAAAACATGCCCATGCCCTGGGAGCAGGTTCGTGATGTGAAGGTACTCTATCACATAACTGGGGCTATCACTTTTGTTAATGAGATACCATGGGTTGTTGAGCCCATCTATATGGCACAGTGGGGCACGATGTGGATCATGATGCGAAGAGAAAAAAGGGATAGGCGGCATTTTAAAAGAATGCGTTTTCCACCATTTGATGATGAGGAACCTCCTTTAGATTACGCAGACAATTTGTTAGATGTGGACCCTCTCGAACCTATCCAGTTGGAGCTGGACGAGGAAGAAGATTCTGCTGTGTACACTTGGTTTTATGACCACAAGCCCCTAGTGAAAACAAAACTTATAAATGGGCCTAGTTATAGAAGGTGGCAATTATCACTTCCCATCATGGCAACTTTGCACCGTCTTGCAGGACAGCTACTTTCTGACTTGATTGATAAAAACTATTCTATCTCTTTGAT

Ace file of the UniGene sp_v2.0_unigene37759

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb\|AAD55467.1\|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb\|AEE36353.1\| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana]	-	-	82%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	97%
Blast2go	pre-mrna-processing-splicing factor	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	98%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	98%
Blast2go	Metabolic pathways	01100		0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	98%
Blast2go	starch metabolic process	GO:0005982	Biological Process	98%
Blast2go	seed maturation	GO:0010431	Biological Process	98%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	98%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	98%
Blast2go	cytosol	GO:0005829	Cellular Component	98%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	98%
Blast2go	chloroplast	GO:0009507	Cellular Component	98%
Blast2go	membrane	GO:0016020	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Pre-mRNA-processing-splicing factor 8	IPR012591	-	-
Sma3	PROCN	IPR012592	-	-
Sma3	PRO, C-terminal	IPR012984	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MWN9

Fln msg: Distance to subject end: 2080 aas, your sequence is shorter than subject: 177 - 2357

Fln protein: YRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRRWQLSLPIMATLHRLAGQLLSDLIDKNYSISL

Protein Length: 178

Fln nts: TATCGCCATGACAAGCGTGTTTATCTGGGAGCACTTAAATTTGTACCTCATGCAGTCTACAAACTTCTTGAAAACATGCCCATGCCCTGGGAGCAGGTTCGTGATGTGAAGGTACTCTATCACATAACTGGGGCTATCACTTTTGTTAATGAGATACCATGGGTTGTTGAGCCCATCTATATGGCACAGTGGGGCACGATGTGGATCATGATGCGAAGAGAAAAAAGGGATAGGCGGCATTTTAAAAGAATGCGTTTTCCACCATTTGATGATGAGGAACCTCCTTTAGATTACGCAGACAATTTGTTAGATGTGGACCCTCTCGAACCTATCCAGTTGGAGCTGGACGAGGAAGAAGATTCTGCTGTGTACACTTGGTTTTATGACCACAAGCCCCTAGTGAAAACAAAACTTATAAATGGGCCTAGTTATAGAAGGTGGCAATTATCACTTCCCATCATGGCAACTTTGCACCGTCTTGCAGGACAGCTACTTTCTGACTTGATTGATAAAAACTATTCTATCTCTTTGAT

Fln Alignment:

AllPineV4_c33202___YRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIXXXXXXXXXXXXXXXXXXXXXXXXXXLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRRWQLSLPIMATLHRLAGQLLSDLIDKNY
B9MWN9_______________YRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
258		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain