SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37468

Length: 245 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene37468
CGTCGTGACCTTGGCGTCATCACCTTGGCGTCCCGTTGTCATATATAATAGCTGGATGTCCTTCGATTATAGCCAACCTATGGGATGTTACGGATGGTGATATTGATAGATTTAGCAGGATCCTGCTGAATGGATGGCTTGAATCAGTGTCTAGTGATTGTAGCGAGTTGGAAATGCTCGAGGAATTTCAAAACCTCACAATAGCTGGCCACAAGGGTGCCAAAAAGGTATTAAAACCTACGCAG

Ace file of the UniGene sp_v2.0_unigene37468 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase C50, separase [Medicago truncatula]	-	-	4.0e-11	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	54%
Blast2go	peptidase separase	-	-	1.55884e-15	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	1.55884e-15	69%
Blast2go	meiotic chromosome separation	GO:0051307	Biological Process	1.55884e-15	69%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.55884e-15	69%
Blast2go	positive regulation of sister chromatid cohesion	GO:0045876	Biological Process	1.55884e-15	69%
Blast2go	endosperm development	GO:0009960	Biological Process	1.55884e-15	69%
Blast2go	circadian rhythm	GO:0007623	Biological Process	1.55884e-15	69%
Blast2go	glucosinolate catabolic process	GO:0019762	Biological Process	1.55884e-15	69%
Blast2go	leaf senescence	GO:0010150	Biological Process	1.55884e-15	69%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	1.55884e-15	69%
Blast2go	regulation of catalytic activity	GO:0050790	Biological Process	1.55884e-15	69%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.55884e-15	69%
Blast2go	enzyme regulator activity	GO:0030234	Molecular Function	1.55884e-15	69%
Blast2go	protein binding	GO:0005515	Molecular Function	1.55884e-15	69%
Blast2go	nucleus	GO:0005634	Cellular Component	1.55884e-15	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RY57

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 59 aas, your sequence is shorter than subject: 81 - 2426

Fln protein: S*PWRHHLGVPLSYIIAGCPSIIANLWDVTDGDIDRFSRILLNGWLESVSSDCSELEMLEEFQNLTIAGHKGAKKVLKPTQ

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCGTCATCACCTTGGCGTCCCGTTGTCATATATAATAGCTGGATGTCCTTCGATTATAGCCAACCTATGGGATGTTACGGATGGTGATATTGATAGATTTAGCAGGATCCTGCTGAATGGATGGCTTGAATCAGTGTCTAGTGATTGTAGCGAGTTGGAAATGCTCGAGGAATTTCAAAACCTCACAATAGCTGGCCACAAGGGTGCCAAAAAGGTATTAAAACCTACGCAG

Fln Alignment:

AllPineV4_c32696___LGVPLSYIIAGCPSIIANLWDVTDGDIDRFSRILLNGWL---ESVSSDCSELEMLEEF-QNLTIAGHKGAKK
A9RY57_______________VGVPLSFLMAGCPAAIANLWDVTDGDIDRFSRFLLHKWLGTPNDVDSVTLERKVQDEAKQTMDVAGQHGSRK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
169	33		66		0.997476
212		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain