SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37442

Length: 520 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene37442
TGCGACGATATTTGAGTACTCTCTCAATCAAAACAACCTCGATTACTATGACATCTCTCTGGTGGATGGATTCAACCTGCCAGTGTCGATCATTCCCTCCAACTCTTCGTGCCACGCAATCGCCTGCAGCAGCAATATAAGTGCCATCTGCCCCGCTGAATTGAGGGTTTCCGGCGGATGCGATGCCGCCTGCAATCGTTTTAATACATCACAATATTGCTGTACGGGGCAATATTTCAACAATTGCGGTCCGACTAATTATTCGATGGTTTTCAAGCGCCAATGCCCCCAGGCCTACACCTATGCAAAGGACGACGCCACCAGCATGTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGTCCCAATATGACACTGACACCGTATGGCTCCCCCACAATGTCGCCTACAATGCCGCCCAGATCGACGAATTTGTCACCGTTACCGGGCAATTCGACACACACG

Ace file of the UniGene sp_v2.0_unigene37442

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Pinus taeda RepID=A5HIY3_PINTA	-	-	68%
FL-Next	tr=Thaumatin-like protein; Pinus taeda (Loblolly pine).	-	-	68%
Blast2go	thaumatin-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5HIY3

Fln msg: STOP codon was not found. Distance to subject end: 49 aas, your sequence is shorter than subject: 173 - 234

Fln protein: ATIFEYSLNQNNLDYYDISLVDGFNLPVSIIPSNSSCHAIACSSNISAICPAELRVSGGCDAACNRFNTSQYCCTGQYFNNCGPTNYSMVFKRQCPQAYTYAKDDATSMFTCPGSTDYKVVFCGGNATSLQGQNITVVSPNMTLTPYGSPTMSPTMPPRSTNLSPLPGNSTHT

Protein Length: 174

Fln nts: TGCGACGATATTTGAGTACTCTCTCAATCAAAACAACCTCGATTACTATGACATCTCTCTGGTGGATGGATTCAACCTGCCAGTGTCGATCATTCCCTCCAACTCTTCGTGCCACGCAATCGCCTGCAGCAGCAATATAAGTGCCATCTGCCCCGCTGAATTGAGGGTTTCCGGCGGATGCGATGCCGCCTGCAATCGTTTTAATACATCACAATATTGCTGTACGGGGCAATATTTCAACAATTGCGGTCCGACTAATTATTCGATGGTTTTCAAGCGCCAATGCCCCCAGGCCTACACCTATGCAAAGGACGACGCCACCAGCATGTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGTCCCAATATGACACTGACACCGTATGGCTCCCCCACAATGTCGCCTACAATGCCGCCCAGATCGACGAATTTGTCACCGTTACCGGGCAATTCGACACACACG

Fln Alignment:

AllPineV4_c32648___ATIFEYSLNQ-NNLDYYDISLVDGFNLPVSIIPSNSSCHAIACSSNISAICPAELRVSGGCDAACNRFNTSQYCCTGQYFNNCGPTNYSMVFKRQCPQAYTYAKDDATSMFTCPGSTDYKVVFCG
A5HIY3_______________ATLFEYGLNKYQNLDFYDISLVDGFNIPLSVTPSDSSCKVIGCTTDINAVCPAELKVTDGCKSACAEFNTPQYCCTGDYLNNCSPTNYSQFFKGQCPQAYSYAKDDATSTFTCPGGANYNVVFCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain