SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37407

Length: 243 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene37407
AATGTAGAGGTACGCGGGGTTCATCATCATTTGTCTGAGAAGCTCCGGGAGCTCAGAATTCCAGTACAGAGCGATCGCCAGAATCAGAAGCGGAAGAAGAAAGGGTAATGGATTCAGCACTGCCTGACGATTTCAGGTGCCCGATAAGCCTGGAGCTTATGAGCGACCCAGTGATTCTGTGCACGGGGCAGACATACGACAGGTCGTCCATCCAGCGCTGGTTCGAATCCGGTAAGCGCATAT

Ace file of the UniGene sp_v2.0_unigene37407

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plant U box protein 8 [Arabidopsis thaliana]	-	-	4.0e-10	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	2.41532e-25	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	2.41532e-25	87%
Blast2go	transmembrane receptor protein serine/threonine kinase binding	GO:0070696	Molecular Function	2.41532e-25	87%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 336 aas, your sequence is shorter than subject: 80 - 497

Fln protein: CRGTRGSSSFV*EAPGAQNSSTERSPESEAEEERVMDSALPDDFRCPISLELMSDPVILCTGQTYDRSSIQRWFESGKRI

Protein Length: 81

Fln nts: AATGTAGAGGTACGCGGGGTTCATCATCATTTGTCTGAGAAGCTCCGGGAGCTCAGAATTCCAGTACAGAGCGATCGCCAGAATCAGAAGCGGAAGAAGAAAGGGTAATGGATTCAGCACTGCCTGACGATTTCAGGTGCCCGATAAGCCTGGAGCTTATGAGCGACCCAGTGATTCTGTGCACGGGGCAGACATACGACAGGTCGTCCATCCAGCGCTGGTTCGAATCCGGTAAGCGCATAT

Fln Alignment:

AllPineV4_c32596___RVMDSALPDDFRCPISLELMSDPVILCTGQTYDRSSIQRWFESGKR
C0PSB5_______________KISSPIFPEDFRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
53	20			80	0.995493
54		80		20	0.995493
55	80		20		0.995493
57	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain