SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37228

Length: 569 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene37228
ATGGGGGGAAACATGGTATTGGAATCATCCATTTGCGATTCAGTTATGCTCTTATGGCCGGCCAAAGCTCCAACAAAGAGCATTTGTTCTCTAACTGTTACAAGTGTCCATGCTGAGGCTCCAATCTTTGCATTCCATTCTAAAATTTCGCTCGGCTTTGACCCTGAACCCTTTCCCTTCCCAACCCGCCGGCGTGCTATCAGCCTTTCCCAAGTTCAAAAGTCTGTCTTTCTCCCCGAGAATCAACGCCATGAGCGGAAGAACTGTCACGGACGCCTTGATGGGAGATGCCCGTAAAGCCTCCGAGAAGAAAGGTCGGCCACCATTAAAGCACACGGCCAAGGAAAAGGAAGCCGCCAAGAAGGCCGTCGTAGCCAAAGAGGCCGAACAAGGCGCTGTAGCTGCTCCGTCCGTTGACGATAAGATTGCCCAGCTCTCGAAGAAGGCCTCCGAGTTCGAACCCAAGGCCGCCGCTTTCTGGAACGACGGCGAGCACGTTCCCTTCCTGTTTCTTGCCCGAGCCCTAGACTTGATATCCAACGAATCTGGAAGAATCGCCATCACAGAGA

Ace file of the UniGene sp_v2.0_unigene37228

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA ligase n=1 Tax=Sorghum bicolor RepID=C5WXG6_SORBI	-	-	3.0e-12	78%
FL-Next	sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	dna ligase	-	-	2.76907e-13	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	2.76907e-13	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.76907e-13	76%

Source	InterPros	Term	Type	Identity
Sma3	DNA ligase, ATP-dependent	IPR000977	-	-
Sma3	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	-
Sma3	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q42572

Fln msg: Distance to subject end: 592 aas, atg_distance in limit (1-15): atg_distance = 10, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 153 - 790

Fln protein: MLRLQSLHSILKFRSALTLNPFPSQPAGVLSAFPKFKSLSFSPRINAMSGRTVTDALMGDARKASEKKGRPPLKHTAKEKEAAKKAVVAKEAEQGAVAAPSVDDKIAQLSKKASEFEPKAAAFWNDGEHVPFLFLARALDLISNESGRIAITE

Protein Length: 154

Fln nts: ATGGGGGGAAACATGGTATTGGAATCATCCATTTGCGATTCAGTTATGCTCTTATGGCCGGCCAAAGCTCCAACAAAGAGCATTTGTTCTCTAACTGTTACAAGTGTCC_-_ATGCTGAGGCTCCAATCTTTGCATTCCATTCTAAAATTTCGCTCGGCTTTGACCCTGAACCCTTTCCCTTCCCAACCCGCCGGCGTGCTATCAGCCTTTCCCAAGTTCAAAAGTCTGTCTTTCTCCCCGAGAATCAACGCCATGAGCGGAAGAACTGTCACGGACGCCTTGATGGGAGATGCCCGTAAAGCCTCCGAGAAGAAAGGTCGGCCACCATTAAAGCACACGGCCAAGGAAAAGGAAGCCGCCAAGAAGGCCGTCGTAGCCAAAGAGGCCGAACAAGGCGCTGTAGCTGCTCCGTCCGTTGACGATAAGATTGCCCAGCTCTCGAAGAAGGCCTCCGAGTTCGAACCCAAGGCCGCCGCTTTCTGGAACGACGGCGAGCACGTTCCCTTCCTGTTTCTTGCCCGAGCCCTAGACTTGATATCCAACGAATCTGGAAGAATCGCCATCACAGAGA

Fln Alignment:

AllPineV4_c32299___KIAQLSKKASEFEPKAAAFWNDGEHVPFLFLARALDLISNESGRIAITE
Q42572_______________KIGLLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITD

SNPs (tot: 3)

Position	A %	C %	T %	Probability
235	33	66		0.997453
293	25	75		0.996473
317		50	50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain