SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37196

Length: 870 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene37196 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	receptor protein kinase-like protein	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: your sequence is shorter than subject: 269 - 818

Fln protein: LSLGYNNFSGVIPQWISNLISMQVLDLSNNKFSGTIPSNLKRLKGFVIYQSSQLNINFDRLYEGLEIGMKHFEYHLEYVLETNTIFDLSNNNLTGVIPWSMRNLRSLRLLNLSGNHLGGEIPTCLSKISTLEELDLSKNNLSGAIPRELSELSFLGVLDVSFNNLCGPIPTGTQFSTFSVSSFQENKCLCGYPLKSCNQNETGIGSFVNKGGWLSGINEHMSLIALWMGIGIGFWGVVVVVIVWKRARNWVVPSNKPIPFYGVYRFPK*

Protein Length: 270

Fln nts: TTTTGAGCCTTGGTTATAATAATTTCAGTGGTGTTATTCCTCAGTGGATCTCAAATCTCATTAGCATGCAAGTATTGGATTTATCCAATAATAAATTTAGTGGAACAATACCATCTAATCTCAAGAGACTCAAAGGATTTGTAATCTATCAATCTTCTCAACTCAATATCAATTTTGATAGATTATATGAGGGTTTGGAGATTGGGATGAAACATTTTGAGTATCACTTAGAATATGTGTTAGAGACAAATACAATATTTGATTTGTCTAACAATAATCTTACAGGGGTAATCCCTTGGAGCATGAGAAATTTGAGAAGCTTAAGATTGTTGAATCTATCAGGAAATCATCTTGGAGGAGAAATACCTACATGCTTAAGTAAAATATCTACATTGGAAGAGTTGGACTTGTCCAAAAATAATTTGAGTGGAGCTATTCCCCGGGAGCTCTCTGAATTATCATTTTTGGGGGTTCTAGATGTTTCTTTTAACAACCTGTGTGGGCCAATCCCAACAGGGACACAATTTTCTACTTTTAGTGTATCTTCATTCCAAGAGAATAAGTGTTTATGTGGGTATCCTTTGAAATCATGCAACCAAAATGAAACAGGAATAGGAAGCTTTGTCAATAAAGGTGGATGGTTGAGTGGAATAAATGAACACATGTCATTGATAGCATTATGGATGGGAATCGGGATTGGATTTTGGGGAGTGGTTGTTGTGGTCATTGTGTGGAAGAGAGCCAGAAATTGGGTGGTTCCCTCCAATAAACCGATACCTTTTTATGGAGTGTATCGCTTCCCAAAATAA___TAGATGGTGGAAGAGACTATAATGCTACTTAATTGTACTGAAAAGTTAGTGTAATATGTAT

Fln Alignment:

AllPineV4_c32247___LSLGYNNFSGVIPQWISNLISMQVLDLSNNKFSGTIPSNLKRLKGFVIYQSSQLNINFDRLYEGLEIGMKHFEYHLEYVLETNTIFDLSNNNLTGVIPWXXXXXXXXXXXXXXXXXXXGEIPTCLSKISTLEELDLSKNNLSGAIPRELSELSFLGVLDVSFNNLCGPIPTGXXXXXXXXXXXQENKCLCGYPLKSCN--QNETGIGSFVN-KGGWLSGINEHMSLIALXXXXXXXXXXXXXXXXXWKRARNWVVPSNKPIPFYGVYRFPK
B8LQX6_______________LSVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSN--TLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIPLGTQFDTFNATSFQNNKCLCGFPLQACKSMENETPKGMMVGVSHGWLSHVEEHVSLIALALGLGIGFGGFVGMMILWKKARDWVMPP-KIKPFYGVYKFPK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
428		66		33	0.997453
497	66		33		0.997454
503		33		66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain