SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37134

Length: 354 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene37134
CGTCGTGACCTTGGCTGTCACTCATCTGTGGGCGAAGCCTGATAGTAGAGAGTTTGTCAAATGCATTGATTGTCCATGGCATCACAATAAACCAGGAGAGCGACATAATGGTTATATACTTTTCAAGGCCAACGGAGGATTGAATCAGATGCGTACAGGAATTTGTGATATGGTCGCCATTGCAAGGATTATGAATGCCGTACTTGTTATACCGACTTTGGACAACAGTTCATTTTGGGCTGATCCAAGTGAATTCAAAGACATTTTTGATCTTCATCACTTTATTAATGTTCTAAAGGAAGATGTGCGCATTGTTGAGTCTTTACCAGCATCTCATAAAAATGTTAAACCATT

Ace file of the UniGene sp_v2.0_unigene37134

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] emb\|CAB69838.1\| putative protein [Arabidopsis thaliana] gb\|ACI49772.1\| At5g01100 [Arabidopsis thaliana] gb\|AED90299.1\| O-fucosyltransferase family protein [Arabidopsis thaliana]	-	-	2.0e-32	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein	-	-	2.53635e-43	76%

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3		IPR004348	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 117 - 634

Fln protein: VVTLAVTHLWAKPDSREFVKCIDCPWHHNKPGERHNGYILFKANGGLNQMRTGICDMVAIARIMNAVLVIPTLDNSSFWADPSEFKDIFDLHHFINVLKEDVRIVESLPASHKNVKP

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGTGGGCGAAGCCTGATAGTAGAGAGTTTGTCAAATGCATTGATTGTCCATGGCATCACAATAAACCAGGAGAGCGACATAATGGTTATATACTTTTCAAGGCCAACGGAGGATTGAATCAGATGCGTACAGGAATTTGTGATATGGTCGCCATTGCAAGGATTATGAATGCCGTACTTGTTATACCGACTTTGGACAACAGTTCATTTTGGGCTGATCCAAGTGAATTCAAAGACATTTTTGATCTTCATCACTTTATTAATGTTCTAAAGGAAGATGTGCGCATTGTTGAGTCTTTACCAGCATCTCATAAAAATGTTAAACCATT

Fln Alignment:

AllPineV4_c32134___LWAKPDSREFVKCIDCPWHHNKPGERHNGYILFKANGGLNQMRTGICDMVAIARIMNAVLVIPTLDNSSFWADPSEFKDIFDLHHFINVLKEDVRIVESLPASHKNVKP
B8LQ81_______________IWFKPKGDDLEQCIERSKSYKKLEGGTNGFLLVHANGGLNQMRTGICDMVAVARIMNATLVLPSLDHSSFWTDPSDFEDIFDWHHFTKTLREDVRIVKSLPASYAKIEP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
178		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain