SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37123

Length: 915 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene37123

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Bromodomain protein 103-like n=3 Tax=Oryza sativa RepID=Q69IM3_ORYSJ	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	67%
Blast2go	bromodomain protein with a aaa atpase domain	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Bromodomain	IPR001487	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8BDI7

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 305 - 1113

Fln protein: RRDLGCHSEELRKELAAACVGYCGADLKALCTEAAIRAFRQKYPQVYSSDDQFVIDVDSVKVERHHFLEAMSAITPAAHRGAIVHSRPLSPVIAPCLQGHLDKIRKCISEIFPILAKGDTKDSFDNNSRNLANLFGFPYCSLIPVVYRPRLLLCGKEGAGLDHIGPAVLHELERFPVHSLGLPSLMSDPSAKTPEEALVHIVGEARRNTPSILYLPQLQLWWETAHLQLRAVLSTLLEELPSDLPVLLLATSSVPFGELDEEIGSLFSHRYVYQVEKPTSDDRLKFISKIVDAFLTIPDQEATLR

Protein Length: 306

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGGAATTAAGGAAGGAACTTGCAGCAGCTTGTGTGGGGTATTGTGGTGCTGATCTAAAAGCTTTGTGCACTGAGGCTGCTATCAGAGCCTTCCGTCAAAAGTACCCCCAAGTATATAGTAGTGATGACCAGTTTGTTATAGACGTGGATTCTGTCAAAGTGGAGAGACATCATTTTTTGGAAGCGATGTCTGCCATTACACCTGCTGCACATAGAGGTGCAATAGTGCATTCTAGACCATTGTCACCTGTAATAGCTCCATGCTTACAAGGTCATCTGGACAAGATTAGAAAGTGTATTTCTGAAATATTCCCCATATTAGCAAAGGGGGATACAAAAGATTCCTTTGATAACAATTCTCGTAATCTTGCTAACTTATTTGGATTTCCCTACTGCTCTTTAATTCCTGTTGTATACAGACCAAGGCTTTTGTTGTGTGGAAAGGAAGGCGCCGGCTTGGATCATATTGGCCCTGCAGTTTTACATGAATTAGAAAGGTTCCCTGTGCATTCACTTGGGCTTCCATCACTTATGTCTGATCCAAGTGCCAAGACACCCGAAGAAGCATTAGTACATATTGTGGGAGAAGCAAGAAGGAATACACCTTCTATATTGTATTTGCCTCAACTTCAACTATGGTGGGAAACTGCACATCTTCAGCTAAGAGCTGTTTTATCAACTCTTTTGGAAGAGTTACCCTCAGATCTTCCTGTATTACTTCTTGCAACTTCATCAGTGCCGTTTGGTGAACTAGATGAAGAAATTGGTTCATTGTTTTCTCACCGCTATGTCTACCAAGTAGAAAAGCCAACTTCTGATGATAGGCTGAAGTTCATCTCAAAGATTGTCGATGCGTTTCTTACCATACCTGATCAAGAAGCTACCCTTCGC

Fln Alignment:

AllPineV4_c32119___EELRKELAAACVGYCGADLKALCTEAAIRAFRQKYPQVYSSDDQFVIDVDSVKVERHHFLEAMSAITPAAHRGAIVHSRPLSPVIAPCLQGHLDKIRKCISEIFPILAKGDTKDSFDNNSRNLANLFGFPYCSLIPVVYRPRLLLCGKEGAGLDHIGPAVLHELERFPVHSLGLPSLMSDPSAKTPEEALVHIVGEARRNTPSILYLPQLQLWWETAHLQLRAVLSTLLEELPSDLPVLLLATSSVPFGELDEEIGSLFSHRYVYQVEKPTSDDRLKFISKIVDAFLTIPDQEA
B8BDI7_______________KELKTELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVRVEKYHFLEAMSTITPAAHRGSIVHSRPLSPVIAPCLKRHLEKIMERIADIFPFLSSVD-----------ISKFSALSYGSSIPLVYRPRLLMCGGVSVGLDHVGPAVLHELEKFSVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHLWWDTAHEQLRAVLLTLLNELPSNLPVLLLGTSSVAFGDLEEECASIFSSRNVYEVDQPSDDDRMRYLHALFESLLSFQMEES

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
438	25			75	0.99649
442	66		33		0.997452
443			33	66	0.997452
461		33		66	0.997476
483			75	25	0.996479
485			25	75	0.996481
490		25		75	0.996483
492	66			33	0.997452
495	66		33		0.997452
496		33		66	0.997452
499			66	33	0.997452
505	33			66	0.997452
506			66	33	0.997452
508	85	14			0.993536
512			20	80	0.995493
514			20	80	0.995493
518	83			16	0.994516
521	80		20		0.995493
522	80	20			0.995493
524			20	80	0.995493
525	80			20	0.995493
526		20	80		0.995493
528	83	16			0.994523
529	83			16	0.994523
530		20	80		0.995493
531	20		80		0.995493
533		16		83	0.994514

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain