SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36900

Length: 656 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36900 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] dbj\|BAD33650.1\| putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] gb\|EAZ44777.1\| hypothetical protein OsJ_29408 [Oryza sativa Japonica Gr	-	-	9.0e-35	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	5.7173e-43	67%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Copine	IPR010734	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
223	20	80			0.995493
235		25		75	0.996474
239		75		25	0.996473
240		25		75	0.996473
262	75		25		0.996473
267	75		25		0.996474
285		75		25	0.996473
320	20		80		0.995493
323		40	60		1.0
324		40		60	1.0
326	80	20			0.995493
350		20		80	0.995493
366	80	20			0.995493
369			20	80	0.995493
379			80	20	0.995493
404	66		33		0.997471
425	33			66	0.997452
434	33	33		33	0.997752
436	66	33			0.997464
437		33	66		0.997454
440		33		66	0.997453
452	33			66	0.997458
455	66		33		0.997452
465		66	33		0.997457
468	66		33		0.997454
476	33			66	0.997471
500	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain