SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36899

Length: 437 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene36899
AATGTAACTTAAAGTGACATCTTTATGCCCTAAGTCAGATGGATGTGCACGTTCGTCTATTAATGGTTGGGCATGGCACAAGTGGTCTCACAGTGCTTCTCCCGCGGAGAGAGCTCTTGTTCGAGGTAGTTGCAGCATAGGAGTTGATAAGTTTGGTGGTTTGCAAGACAATTCTTTTAGATTGTTAAATAACAAGAACCAGTCAGCCCGAACAAATAGAGCGAAGTTTCGAAATCTAGTAGCTGCTGCTGAGGGTGCTGAACTACTGAAAATTACACAGTTGAAGGCTCGAAAAAAGCGATTGAAATTTCAGCGAAGCAAGATACATGACTGGGGTCTGGTTGCTTTGGAGCATATTGAGGCAGAAGACTTTGTGATTGAATATGTTGGGGAATTGATTCGGCCAAAGATATCTGATATTCGTGAATGCCAATATG

Ace file of the UniGene sp_v2.0_unigene36899

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9R8W9_RICCO	-	-	69%
FL-Next	sp=Histone-lysine N-methyltransferase ATX2; Arabidopsis thaliana (Mouse-ear cress).	-	-	29%
Blast2go	histone-lysine n-methyltransferase setd1b	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	74%
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	74%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	74%
Blast2go	histone H3-K36 methylation	GO:0010452	Biological Process	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	GYF	IPR003169	-	-
Sma3	Post-SET domain	IPR003616	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P0CB22

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 118 aas, your sequence is shorter than subject: 145 - 1083

Fln protein: M*LKVTSLCPKSDGCARSSINGWAWHKWSHSASPAERALVRGSCSIGVDKFGGLQDNSFRLLNNKNQSARTNRAKFRNLVAAAEGAELLKITQLKARKKRLKFQRSKIHDWGLVALEHIEAEDFVIEYVGELIRPKISDIRECQY

Protein Length: 146

Fln nts: AATGTAACTTAAAGTGACATCTTTATGCCCTAAGTCAGATGGATGTGCACGTTCGTCTATTAATGGTTGGGCATGGCACAAGTGGTCTCACAGTGCTTCTCCCGCGGAGAGAGCTCTTGTTCGAGGTAGTTGCAGCATAGGAGTTGATAAGTTTGGTGGTTTGCAAGACAATTCTTTTAGATTGTTAAATAACAAGAACCAGTCAGCCCGAACAAATAGAGCGAAGTTTCGAAATCTAGTAGCTGCTGCTGAGGGTGCTGAACTACTGAAAATTACACAGTTGAAGGCTCGAAAAAAGCGATTGAAATTTCAGCGAAGCAAGATACATGACTGGGGTCTGGTTGCTTTGGAGCATATTGAGGCAGAAGACTTTGTGATTGAATATGTTGGGGAATTGATTCGGCCAAAGATATCTGATATTCGTGAATGCCAATATG

Fln Alignment:

AllPineV4_c31696___PKSDGCARSSINGWAWHKWSH-----SASPAERALVRGSCSIGVDKFGGLQDNSFRLLNNKNQSARTNRAKFRNLVAAAEGAELLKITQLKARKKRLKFQRSKIHDWGLVALEHIEAEDFVIEYVGELIRPKISDIRE
P0CB22_______________PNPSGCARTEPYNYLGRRGRKEPEALAGASSKRLFVENQPYI----VGGYSRHEFSTYERIYGSKMSQITTPSNILSMAEKYTFMKETY----RKRLAFGKSGIHGFGIFAKLPHRAGDMVIEYTGELVRPPIADKRE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
276		75		25	0.996473
390		33		66	0.997452
400			33	66	0.997464
404			33	66	0.997471
405	33			66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain