SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36874

Length: 888 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Helicase, putative n=1 Tax=Ricinus communis RepID=B9SBN6_RICCO	-	-	47%
FL-Next	sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice).	-	-	47%
Blast2go	swr1 complex snf2 family dna-dependent atpase	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	petal formation	GO:0048451	Biological Process	72%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	72%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	72%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	cell wall	GO:0005618	Cellular Component	72%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	HSA	IPR006562	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
489	33		66	0.997452
491		33	66	0.997452
493		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain