SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36854

Length: 312 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene36854
CGTCGTGACCTTGGCTGTCAGTCAGACAGGGGATTGAGGAAGATGCCAGGATATAGCTGGATTGAGGTGAACAGCAAAGTGCACGCCTTCCTTGCTGGAGACAGATCACAGCCAGAAACAGAAAAAATTTATGCTAAGTTGGAGAGTTTGGCTGGGCAGATGAAGGAGGCAGGGTATTTGACCACCATGAATGCTGCGCTTTATGATGTGGAGGAGGAACAGAAAGAACACATTATCTGCCATCATAGCGAGAAGCTGGCCATTGCCTTTGGGCTTATCAAGACTTCCCATGGAACACCTATCCGCATTGTC

Ace file of the UniGene sp_v2.0_unigene36854

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	8.0e-33	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	pentatricopeptide repeat protein	-	-	1.85392e-42	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 104 - 246

Fln protein: RRDLGCQSDRGLRKMPGYSWIEVNSKVHAFLAGDRSQPETEKIYAKLESLAGQMKEAGYLTTMNAALYDVEEEQKEHIICHHSEKLAIAFGLIKTSHGTPIRIV

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCAGTCAGACAGGGGATTGAGGAAGATGCCAGGATATAGCTGGATTGAGGTGAACAGCAAAGTGCACGCCTTCCTTGCTGGAGACAGATCACAGCCAGAAACAGAAAAAATTTATGCTAAGTTGGAGAGTTTGGCTGGGCAGATGAAGGAGGCAGGGTATTTGACCACCATGAATGCTGCGCTTTATGATGTGGAGGAGGAACAGAAAGAACACATTATCTGCCATCATAGCGAGAAGCTGGCCATTGCCTTTGGGCTTATCAAGACTTCCCATGGAACACCTATCCGCATTGTC

Fln Alignment:

AllPineV4_c31622___DRGLRKMPGYSWIEVNSKVHAFLAGDRSQPETEKIYAKLESLAGQMKEAGYLTTMNAALYDVEEEQKEHIICHHSEKLAIAFGLIKTSHGTPIRIV
D5AAE0_______________DRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain