SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36839

Length: 830 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36839

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RLX9_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	gdsl esterase lipase at1g74460-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2L0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 125 aas, your sequence is shorter than subject: 254 - 377

Fln protein: MDRVGIQIPITGFMATLMVVLVVLCVGAGAAETEIKPVSFIFGDSLSDVGNNNYLPRSLAKANYPWYGIDYGNGTATGRYTNGRTICDIVAEEIGLPVPAPYVAPLTDEYVVLKHGVNYASGGGGILNETGSLFIQRLCLWRQIEMFQGTKITIAKKIGDDQAEKFFNQSIYLMSIGSNDYINNYLLPVQADSWTYTPDGFIQYLASTLRQQITTLHHLGVRKLLFTGLGPVGCIPLQRVLTTDGGCQQNLNE*

Protein Length: 255

Fln nts: ATGGGGGAACAGACCAATAGCCGTACCCGGGAACAATTACAGAAGGGCACTTTGTGCATACAGGAACA_-_ATGGATAGGGTTGGGATTCAGATACCCATTACAGGTTTCATGGCGACCTTAATGGTGGTACTGGTGGTGTTATGCGTTGGCGCAGGTGCAGCAGAAACAGAGATAAAGCCTGTATCTTTTATTTTCGGGGATTCTTTGTCAGATGTTGGAAACAACAATTATCTGCCCCgGAGTCTGGCtAAGGCCAATTATCCATGGTATGGCATTGACTATGGCAAtGGAACGGCTACTGGcAGATACACgAATGGcCGAACCaTTTGTGATATAGTTGCTGAAGAAATAGGTCTTCCAgTCCCAGCACCATACgTcGcTCCcTtgaCaGATGAGtaCGTCGTGTTGAAACATGGTGTCAACTATGCTTCGGGTGGAGGAGGCATTCTTAACGAAACAGGATCTCTTTTTATTCAGCGACTGTGTCTGTGGAGACAAATAGAGATGTTTCAAGGAACTAAGATAACTATAGCCAAGAAAATCGGGGATGACCAGGCGGAGAAGTTCTTTAATCAATCCATCTAcTTAATGTCCATTGGAAGCAACGACTACATCAACAATTATTTGCTCCCAGTGCAGGCTGATTCCTGGACATACACTCCCGATGGTTTCATACAGTATCTTGCCTCTACATTGCGCCAACAAATAACGACGCTACACCATTTAGGCGTGCGCAAGTTGCTCTTCACAGGATTGGGACCTGTCGGATGCATTCCACTGCAGCGGGTACTGACAACAGATGGAGGTTGCCAACAGAATCTCAACGAATAA

Fln Alignment:

AllPineV4_c31604___MDRVGIQIPITGFMATLMXXXXXXXXXXXXXETEIKPVSFIFGDSLSDVGNNNYLPRSLAKANYPWYGIDYGNGTATGRYTNGRTICDIVAEEIGLPVPAPYVAPLTDEYVVLKHGVNYASGGGGILNETGSLFIQRLCLWRQIEMFQGTKITIAKKIGDDQAEKFFNQSIYLMSIGSNDYINNYLLPVQADSWTYTPDGFIQYLASTLRQQITTLHHLGVRKLLFTGLGPVGCIPLQRVLTTDGGCQQNLNE
A9P2L0_______________MDRFGFEAPITFFKAMLMVVAIYVGTGAA--ETEIKPVSFIFGDSLSDVGNNNHLPRSLAKSNYPWYGIDFGNGLPTGRYTNGRTICDIVAQKIGLPIPAPYLAPSTDENVVLKRGVNYASGGGGILNETGSLFIQRLCLWKQIEMFQSTKMTIAKKIGHARAEKFFNGSIYLMSIGSNDYINNYLLPVQADSWEYTPDDFINYLVSTLRQQLTTLHQLGVRQLLFTGLGPVGCIPLQRVLTTDGSCQQILND

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
375		50	50		1.0
377		50	50		1.0
379		50		50	1.0
380			40	60	1.0
381	40	60			1.0
383	50	50			1.0
385		50		50	1.0
386		50	50		1.0
387	50		50		1.0
389	50			50	1.0
393		40	60		1.0
395		40	60		1.0
396	50			50	1.0
397	50	50			1.0
398	40	60			1.0
404	40		60		1.0
494	75		25		0.996473
546		25	75		0.996473
573		75	25		0.996473
584		33		66	1.0
618		75		25	0.996473
625	25			75	0.996473
637	20	80			0.995493
645		20		80	0.995493
669		25		75	0.996473
676		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain