SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36775

Length: 491 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene36775
AGAGGTGGATGCATTGGCTGGTGCAGAATTGCCAACCTGGGGATTCTCTGGTGTTCCATTATTCTGGGCATGGCTCTCAGCAAAAAGATTACACTGGCCACGAAGTTGATGGCTACGACGAAACGCTGTTGCCTCTTGACTTTCAGACGGCGGGGATGATCGTGGACAATGAGATCAACGATACGCTGGTAAAACCACTTCCTCTCGGAGCTCGACTGCATGCAATCATCGATGCTTGCCATAGTGGTACTGTTCTTGATTTGCCCTACGTCTGCCTCTTCAACCCCAGAGGAGGAAAATGTGCGTGGGAGGACCATACACCTCAAAATGGTATGCGCAAAGGAACAATGGGAGGTGAAGCCATATCTTTTAGCGGATGCGATGATGACCAGACCTATGCAGATACCAAGGCGCTCTCAAAGATTACATCAACAGGAGCCATGACTTACAGTCTTATAGAGGCAATTGAGAATGGAAAAGAGATAACTTAT

Ace file of the UniGene sp_v2.0_unigene36775 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caspase, putative n=1 Tax=Ricinus communis RepID=B9SKF8_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Flagellar motor protein MotA, conserved site	IPR000540	-	-
Sma3	Insect cuticle protein	IPR000618	-	-
Sma3	MORN motif	IPR003409	-	-
Sma3	Zinc finger, LSD1-type	IPR005735	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Peptidase C14, caspase catalytic	IPR011600	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1N4

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 163 - 364

Fln protein: RWMHWLVQNCQPGDSLVFHYSGHGSQQKDYTGHEVDGYDETLLPLDFQTAGMIVDNEINDTLVKPLPLGARLHAIIDACHSGTVLDLPYVCLFNPRGGKCAWEDHTPQNGMRKGTMGGEAISFSGCDDDQTYADTKALSKITSTGAMTYSLIEAIENGKEITY

Protein Length: 164

Fln nts: AGAGGTGGATGCATTGGCTGGTGCAGAATTGCCAACCTGGGGATTCTCTGGTGTTCCATTATTCTGGGCATGGCTCTCAGCAAAAAGATTACACTGGCCACGAAGTTGATGGCTACGACGAAACGCTGTTGCCTCTTGACTTTCAGACGGCGGGGATGATCGTGGACAATGAGATCAACGATACGCTGGTAAAACCACTTCCTCTCGGAGCTCGACTGCATGCAATCATCGATGCTTGCCATAGTGGTACTGTTCTTGATTTGCCCTACGTCTGCCTCTTCAACCCCAGAGGAGGAAAATGTGCGTGGGAGGACCATACACCTCAAAATGGTATGCGCAAAGGAACAATGGGAGGTGAAGCCATATCTTTTAGCGGATGCGATGATGACCAGACCTATGCAGATACCAAGGCGCTCTCAAAGATTACATCAACAGGAGCCATGACTTACAGTCTTATAGAGGCAATTGAGAATGGAAAAGAGATAACTTAT

Fln Alignment:

AllPineV4_c31492___RWMHWLVQNCQPGDSLVFHYSGHGSQQKDYTGHEVDGYDETLLPLDFQTAGMIVDNEINDTLVKPLPLGARLHAIIDACHSGTVLDLPYVCLFNPRGGKCAWEDHTPQNGMRKGTMGGEAISFSGCDDDQTYADTKALSKITSTGAMTYSLIEAIENGKEITY
A9P1N4_______________RWMCWLVQDCQPGDSLVFHYSGHGSQQRDYTGHEIDGYDETLLPLDFQKAGMIVDNEMNDTLVKPLPPGARLHAIIDACHSGTVLDLPYVCVFNPTKGKCAWEDHTPQNGMWKGTMGGEAISFSGCDDDQTSADTKALSKITSTGAMTFSFIKAIEKGEGKTY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
319		71		28	1.0
332	42		57		1.0
339		80	20		0.995493
343			60	40	1.0
345		60		40	1.0
349		40		60	1.0
350	40	20	40		1.0
407	80		20		0.995493
423	20	20	60		0.992552
441	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain