SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36707

Length: 432 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene36707
CAAGCTGTCAAACTCCTGCTATGAGTGCTTCGAAAGCTATTGATCGCGCCATTTGCGAAGATTGGCTTAACAATGTCCCTGATTTGGACAACCTCGGCATAAATTGCTGCCCATTTAGTGCCGATAGAAGTCTTGGATCTCCTTTTGAATGGAAATCTCCGTGGTCTTTGGATTTGACTTCACCATTGGAAAAGCATGGAAGAGATCTACTTCTGGAGGATATGAGCTTCCTGACAAACAGTGCAGATGGAAGGGACGATGCTGTTGGATTAATGAAACATTTATCTGAGCATGCTGCTTCAGCATATGCACAGGCAGAGGAGATTTTGTCTAATGATGAAATAATTTATCACAAACTGTCTCGTCAGTCCAAGCTTGAAATTCTAATTTTAATGAAGATAAGGGATCATAAAGAAAATATACCGCATAAGT

Ace file of the UniGene sp_v2.0_unigene36707

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myb, putative n=1 Tax=Ricinus communis RepID=B9RS48_RICCO	-	-	9.0e-10	37%
FL-Next	tr=Myb, putative; Ricinus communis (Castor bean).	-	-	0.0	37%
Blast2go	myb-related protein 3r-1-like	-	-	8.68085e-11	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	8.68085e-11	56%
Blast2go	transcription coactivator activity	GO:0003713	Molecular Function	8.68085e-11	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RS48

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 143 - 1046

Fln protein: SCQTPAMSASKAIDRAICEDWLNNVPDLDNLGINCCPFSADRSLGSPFEWKSPWSLDLTSPLEKHGRDLLLEDMSFLTNSADGRDDAVGLMKHLSEHAASAYAQAEEILSNDEIIYHKLSRQSKLEILILMKIRDHKENIPHK

Protein Length: 144

Fln nts: CAAGCTGTCAAACTCCTGCTATGAGTGCTTCGAAAGCTATTGATCGCGCCATTTGCGAAGATTGGCTTAACAATGTCCCTGATTTGGACAACCTCGGCATAAATTGCTGCCCATTTAGTGCCGATAGAAGTCTTGGATCTCCTTTTGAATGGAAATCTCCGTGGTCTTTGGATTTGACTTCACCATTGGAAAAGCATGGAAGAGATCTACTTCTGGAGGATATGAGCTTCCTGACAAACAGTGCAGATGGAAGGGACGATGCTGTTGGATTAATGAAACATTTATCTGAGCATGCTGCTTCAGCATATGCACAGGCAGAGGAGATTTTGTCTAATGATGAAATAATTTATCACAAACTGTCTCGTCAGTCCAAGCTTGAAATTCTAATTTTAATGAAGATAAGGGATCATAAAGAAAATATACCGCATAAGT

Fln Alignment:

AllPineV4_c31366___AMSASKAIDRAICEDWLNNVPDLDNLGI-NCCPFSADRSLGSPFEWKSPWSLDLTSPLEKHGRDLLLEDMSFLTNSADGRDDAVGLMKHLSEHAASAYAQAEEILSND
B9RS48_______________SVPSENAVDNA------GNDAGTENLSIFGETPFK--RSIESPSAWKSPWFINSFLPGPRVDTDISIEDIGYFMSPGDRSYDAIALMKQLSEHTASAFADALEVLGNE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain