SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36661

Length: 928 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36661 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-bisphosphate aldolase n=3 Tax=Solanum tuberosum RepID=Q2PYX3_SOLTU	-	-	50%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	fructose-bisphosphate aldolase	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Vesicle transport protein, SFT2-like	IPR011691	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP14

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 240 - 364

Fln protein: IRMETATVRIARTLTEELDGLTRRCQRYYKAGARCAQCRAVIKINRGEPSRVAVQENAESLARFAMICQRNGLVPILKLEILREGYAFDIQQCADATEIFSAALFKSLNDRRVLPEALLLMVTMILPGSDGPEACPNPHLVVGYTLQALQRTVPVSVPAVFFDPLGQSKDDAILNLNLLNKMDAAKPWNLSFCFSREFQQCALVPWAGKDENIEEAQKALLLLCQANSLAATGKWVKAP*

Protein Length: 241

Fln nts: AATCCGGATGGAGACGGCCACGGTTCGAATCGCGAGGACCCTCACAGAAGAGCTGGATGGCCTGACTCGGCGGTGCCAGAGGTATTACAAGGCCGGCGCCAGGTGCGCTCAGTGCAGGGCCGTAATTAAGATCAACCGGGGGGAGCCATCGCGTGTGGCGGTGCAAGAGAACGCTGAGAGCCTGGCTAGGTTTGCCATGATCTGCCAGAGAAACGGGCTGGTTCCGATTCTGAAACTCGAGATCCTTCGAGAGGGTTACGCCTTTGACATTCAGCAATGCGCCGACGCGACGGAGATATTTTCGGCGGCCCTTTTCAAGTCTTTGAACGACCGCCGGGTTCTGCCAGAGGCTCTTTTATTAATGGTCACCATGATTCTGCCCGGATCTGATGGACCCGAAGCTTGTCCAAACCCCCACCTCGTCGTCGGGTACACTCTCCAGGCATTGCAGCGAACCGTTCCGGTCTCTGTTCCGGCCGTGTTTTTTGATCCGCTGGGGCAAAGCAAGGATGATGCGATTCTGAATTTGAATCTATTGAATAAAATGGATGCGGCCAAACCCTGGAATCTGTCATTCTGTTTCAGCAGAGAGTTTCAACAGTGTGCTCTTGTGCCCTGGGCTGGAAAAGACGAGAATATAGAGGAAGCCCAGAAGGCCCTTCTCTTGCTTTGCCAAGCCAACTCCCTGGCTGCAACTGGCAAATGGGTCAAAGCTCCATGA___CTGGGTGAACTGCCATGGCCAAAAGGGGTAAAGGATCTCGCGGAAGACTGTGAAAGCTGAAATTTTCCTGCTTCCTGCAGCTTGCGAAGCATTCCGCTTCTCTCGGCCTCAAGTCCGCTTGTTCCTGTATGTCATGAAATACTGAACTATTTTATAGAACCAGTAAAATGAATTCCCATACTAATATGCTGTTGATATGTATATATA

Fln Alignment:

AllPineV4_c31283___IRMETATVRIA----RTLTEELDGLTRRCQRYYKAGARCAQCRAVIKINRGEPSRVAVQENAESLARFAMICQRNGLVPILKLEILREGYAFDIQQCADATEIFSAALFKSLNDRRVLPEALLLMVTMILPGSDGPEACPNPHLVVGYTLQALQRTVPVSVPAVFFDPLGQSKDDAILNLNLLNKMDAAKPWNLSFCFSREFQQCALVPWAGKDENIEEAQKALLLLCQANSLAATGKW
A9NP14_______________IKVDKGTVDLAATNGETTTQGLDGLAQRCQQYYKAGARFAKWRAVLKIGPTEPSELSIEQNAQGLARYAIICQENGLVPIVEPEILTDG-SHDIHKCAAVTENVVAAVYKALNDHHVLLEGTLLKPNMVLPGTDGPKAPPEE--IAEHTVRALQRTVPAAVPGIVFLSGGQSEEEATLNLNAINACKTKKPWTLSFSFGRALQQSTLKTWAGKAENLGAAQKAFLARCKANSEATLGKY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
721		80		20	0.995493
760		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain