SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36598

Length: 1387 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36598

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	fidgetin-like protein 1-like	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	93%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, your sequence is shorter than subject: 234 - 439

Fln protein: MAENSWLPSNNEGTHDDISATGFVTARLKLAMDTVQKRGASYSPNVSPSAAVNPVYSTGGNSGGNLRTTVPKSLGMSRRGVRNNFIPPVRSNVAGGGAATASRLPGNVDNGLEESTKRCLEMLVGPDGELPDKLRNLEPRLIEHVSNEIMDQDPNVRWEDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTNRRG*

Protein Length: 235

Fln nts: AATGTATTGAGCATTCTAAGTCAGCTGATACATCCCTCAGGAGACAGGCAAGTTCTCCCCAAAGCAGTTCCTTTCATGAGCTAGCCCAAAAGAGGACAATGCTTTCAAACTGCGCGAACAGCCAGAGAAACATGAATTCCACTTCACCTCTTGTCATTGGCTGTCGATGATAGTGCATATGAAAATAACATAAGAAAAAAGCGACGGCATTTAGAGGGGCCTAACTGT_-_ATGGCTGAAAATAGTTGGCTACCATCTAACAATGAAGGCACGCATGATGATATTTCAGCTACTGGATTTGTTACAGCGAGATTAAAATTGGCAATGGATACCGTGCAGAAACGAGGTGCTTCTTATTCTCCGAATGTTTCTCCATCTGCAGCTGTTAATCCAGTATATTCTACTGGTGGTAATAGTGGAGGTAATCTGCGTACTACTGTGCCCAAGTCACTGGGGATGTCTCGGAGAGGTGTGCGGAACAACTTTATTCCTCCTGTACGTTCCAATGTTGCTGGTGGTGGGGCTGCCACAGCATCACGTCTACCAGGAAATGTGGATAATGGCTTAGAAGAATCAACAAAACGATGTTTAGAGATGCTTGTGGGTCCTGATGGTGAGCTTCCTGACAAATTACGGAACCTTGAACCCCGTCTTATAGAGCATGTTAGCAATGAGATAATGGACCAGGATCCCAATGTTCGGTGGGAAGATATTGCTGGTCTGGAGCATGCCAAAAAGTGTGTGACTGAAATGGTTATATGGCCTCTTTTGCGGCCGGATATCTTTAAAGGCTGTCGCTCTCCTGGCAAAGGGCTTCTTCTATTTGGCCCTCCTGGCACTGGGAAAACCATGATTGGGAAAGCTATTGCAGGGGAAGCTAAAGCTACTTTCTTTTATATCTCTGCAAGTTCACTGACAAATAGGCGAGGGTGAGAAGCTCGTGAGGGCTTTGTTTGGGGTGGCTAGCTGTCGTCAACCTGCAGTAATTTTTGTTGATGAAATAGATTCTCTTCTCTCCCAACGTAAATCAGATGGAGAACATGAGTCTAGCAGAAGATTGAAGACACAGTTTTTGATAGAAATGGAAGGATTTGATAGTGGCAATGAGCAATTGCTATTGATTGGGGCGACAAACAGGCCACAGGAACTTGATGAAGCTGCTCGTAGACGTCTAACAAAGCGCCTGTACATACCACTACCATCTACAGAAGCAAGATCGTGGATAGTAAAGAATCTGTTGGAGAAGGATGGCTTGCTTACACTCTCAATTGAAGATATAAGCTCTATCTGCAAGATTACCGAAGGGTATTCTGGATCAGACATGAAAAATCTTGTCAAGGATGCATCAATGGGACCACTTAGAGAAGCCTTGAGGAAAGGCATTGACATT

Fln Alignment:

AllPineV4_c31133___DGELPDKLRNLEPRLIEHVSNEIMDQDPNVRWEDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSXXXXXXXXXXXXXXXXMIGKAIAGEAKATFFYISASSLTNR
A9P2N1_______________DGEDPE-----QAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
342	60		40		1.0
381	28			71	1.0
401		71	28		1.0
517		33	66		0.997467
519			66	33	0.997476
520			66	33	0.997464
697		33		66	0.997452
1222	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain