SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36562

Length: 509 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene36562
CGTCGTGACCTTGGCTGTCACTCAAAGTCTTCACTTGGAAGGGTGCTGGAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTGACTTGAGCTGGTGCTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGAGATCGTGCTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAACGTCTTGACTTGCACGACTGCTTCAATCTTCAGACGCTGCCAGACTCGCTGGGAAACCTGCTTGAGCAACAAAGCGGACGAAAACGCGAACTATCAGAAAGTGAAGAAGACGCGGCAAGTGAAGAAAGCTCAAATGCAGGATGCTTCTAGCGGTGTAATTATACGATGTAGAAGAGAAGGTACATTTTGAAATATGTGGATGCGAGCACGAACATGGTCCTGCAATTAAGATTGTTTTCAAATATTTCATTTATTAATGTTAAGATGG

Ace file of the UniGene sp_v2.0_unigene36562 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	9.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein	-	-	1.31558e-36	70%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: your sequence is shorter than subject: 130 - 1071

Fln protein: VVTLAVTQSLHLEGCWSLQTLPDSVGNLSGLQSLDLSWCSSLQTLPDSVGNLSGLQSLHLRSCSSLQTLPDSVGNLSGLQRLDLHDCFNLQTLPDSLGNLLEQQSGRKRELSESEEDAASEESSNAGCF*

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTCTTCACTTGGAAGGGTGCTGGAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTGACTTGAGCTGGTGCTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGAGATCGTGCTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAACGTCTTGACTTGCACGACTGCTTCAATCTTCAGACGCTGCCAGACTCGCTGGGAAACCTGCTTGAGCAACAAAGCGGACGAAAACGCGAACTATCAGAAAGTGAAGAAGACGCGGCAAGTGAAGAAAGCTCAAATGCAGGATGCTTCTAG___CGGTGTAATTATACGATGTAGAAGAGAAGGTACATTTTGAAATATGTGGATGCGAGCACGAACATGGTCCTGCAATTAAGATTGTTTTCAAATATTTCATTTATTAATGTTAAGATGG

Fln Alignment:

AllPineV4_c30994___VVTLAVTQSLHLEGCWSLQTLPDSVGNLSGLQSLDLSWCSSLQTLPDSVGNLSGLQSLHLRSCSSLQTLPDSVGNLS
C0PQE2_______________VGTLTGLQTLYLDGYSTLQMLPDSIWNLMGLKRLTLAGATLCRR--SQVGNLTGLQTLHL---TGLQTLKDRAVSLT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
87		25		75	0.996473
305		25	75		0.996473
306		25	75		0.996473
307		25	75		0.996473
332		33	33	33	0.997702
340		33	33	33	0.997753
413	20	50	30		1.0
432		87		12	0.992554
445		14		85	0.993533
455		16	83		0.994512
458		16		83	0.994512
459	20		80		0.995493
478		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain