SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36507

Length: 554 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene36507
CACCAGGAATGTGGCTCTTAAGATTTGGAGTTTCAAGGAAAAAAAATATCCACATGCGGAATATATAGCTGCGTCGTGACCTTGGCTGTCACTCAACTGATCTCGTCGTGACCTTGGCTGTCACTCAATTTATTTTCTTATTCACCACGGTGTATGGAGAATTGCTTCCATTTATTAAGCGTTTCGATTGATCCCGTGGAGTAGCAGAGATTTGGGAAAAGGTAGATTTCAGTCGAAATTTGAAATTGAGTTTCTATGTGTTTAACTTTACAATCTAGGTCAACAAGTGCAGATATGGCTTCAGAGTTTCTACGCGTTCAGAACGCCTCCGAAGCAAAAAGAACAGTCGTGAATGACAGTGCTAGTTTGATATTCGTCCCTGAAAAACAGCTAACCAAGCCAAGATTCGTACAAGACCTTTCGCGGATAAAACCGAAGATGATGCAAAAGGTGCTTTCATCGATCAGACTTTCAGAGGACAAGAAGGCTGATTTTGCTCCTGTCAATCGTAAGGACGAGGACTCCGATGGACAATCTGAGGCATCGAGTCACAA

Ace file of the UniGene sp_v2.0_unigene36507

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	unknown [Picea sitchensis]	-	-	2.9799e-32	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P132

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 99 - 286

Fln protein: MCLTLQSRSTSADMASEFLRVQNASEAKRTVVNDSASLIFVPEKQLTKPRFVQDLSRIKPKMMQKVLSSIRLSEDKKADFAPVNRKDEDSDGQSEASSH

Protein Length: 100

Fln nts: CACCAGGAATGTGGCTCTTAAGATTTGGAGTTTCAAGGAAAAAAAATATCCACATGCGGAATATATAGCTGCGTCGTGACCTTGGCTGTCACTCAACTGATCTCGTCGTGACCTTGGCTGTCACTCAATTTATTTTCTTATTCACCACGGTGTATGGAGAATTGCTTCCATTTATTAAGCGTTTCGATTGATCCCGTGGAGTAGCAGAGATTTGGGAAAAGGTAGATTTCAGTCGAAATTTGAAATTGAGTTTCT_-_ATGTGTTTAACTTTACAATCTAGGTCAACAAGTGCAGATATGGCTTCAGAGTTTCTACGCGTTCAGAACGCCTCCGAAGCAAAAAGAACAGTCGTGAATGACAGTGCTAGTTTGATATTCGTCCCTGAAAAACAGCTAACCAAGCCAAGATTCGTACAAGACCTTTCGCGGATAAAACCGAAGATGATGCAAAAGGTGCTTTCATCGATCAGACTTTCAGAGGACAAGAAGGCTGATTTTGCTCCTGTCAATCGTAAGGACGAGGACTCCGATGGACAATCTGAGGCATCGAGTCACAA

Fln Alignment:

AllPineV4_c30823___STSADMASEFLRVQNASEAKRTVVNDSASLIFVPEKQLTKPRFVQDLSRIKPKMMQKVLSSIRLSEDKKADFAPVNRKDEDSDGQSEASSH
A9P132_______________STSAAVASEFLRFQNASAANGTVANGSTSWTFVPQKQLAKPRFMQDLSRIKPQMMQKVLSSIGLSEDKNADFALVNRQAEDFNRHSEASSH

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
73	33		66		0.997476
74	33			66	0.997476
76			66	33	0.997476
82	33			66	0.997476
105	50	50			1.0
106	50		50		1.0
108		83	16		0.994519
110		50		50	1.0
111		50	50		1.0
119	50		50		1.0
123		40		60	1.0
124		40		60	1.0
126	40	60			1.0
129	40			60	1.0
135	66			33	1.0
143	85	14			0.993534
144			14	85	0.993534
147	85		14		0.993534
148		85		14	0.993534
149		85	14		0.993535
152		14	85		0.993534
154			83	16	0.994512
157			16	83	0.994512
158	85	14			0.993534
162	83			16	0.994512
163		16	83		0.994512
165	83	16			0.994512
167	16			83	0.994512
189		90		10	0.90298
190		10	90		0.90298
191	90			10	0.90298
192		10		90	0.90298
194			90	10	0.90298
196			10	90	0.90298
197		80	20		0.999996
198		90		10	0.90298
199		90		10	0.90298
200	10		90		0.90298
201		10		90	0.90298
203		20	80		0.999996
205		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain