SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36496

Length: 867 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36496

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein translocase subunit secA, chloroplastic n=1 Tax=Spinacia oleracea RepID=SECA_SPIOL	-	-	79%
FL-Next	sp=Protein translocase subunit SecA, chloroplastic; Spinacia oleracea (Spinach).	-	-	79%
Blast2go	protein translocase subunit chloroplastic-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to absence of light	GO:0009646	Biological Process	89%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	89%
Blast2go	regulation of photosynthesis	GO:0010109	Biological Process	89%
Blast2go	chloroplast organization	GO:0009658	Biological Process	89%
Blast2go	protein transport	GO:0015031	Biological Process	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	SecA protein	IPR000185	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	SecA DEAD-like, N-terminal	IPR011115	-	-
Sma3	SecA Wing/Scaffold	IPR011116	-	-
Sma3	SecA preprotein, cross-linking domain	IPR011130	-	-
Sma3	SecA motor DEAD	IPR014018	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q36795

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 289 - 1036

Fln protein: LPLRKTWKVKETLFPCKLSQDSLSLVEDAVQMAVRTWGKRSLTELQAEDRLSYACEKGPIQDEVLAKLRNAFEAIVCEYKIYTEEEKNKVITAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIEGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFEIRKQLFEFDEVLNSQRDRIYTERRRALEADNLQPQMIEYAELTMDDILEANISPETPKENWNLDALVAKLQQYCYLLNDLTPQVLAEKCSSYDDLREYLRLRGREAYL

Protein Length: 290

Fln nts: TTGCCTCTAAGAAAAACCTGGAAGGTGAAAGAAACTCTATTTCCATGCAAATTGTCTCAAGATAGTTTGTCCTTGGTTGAGGATGCAGTTCAGATGGCTGTCAGAACATGGGGTAAGAGGTCATTGACTGAGCTTCAGGCAGAAGATCGCCTGTCATATGCGTGTGAGAAGGGCCCAATCCAAGATGAAGTCCTTGCAAAGCTACGCAATGCTTTTGAAGCTATTGTTTGTGAGTATAAAATCTATACAGAAGAGGAGAAAAATAAGGTAATTACAGCAGGGGGACTTCATGTAGTTGGTACAGAGCGGCATGAGTCAAGGCGTATTGACAATCAGCTGCGTGGAAGAAGTGGTAGGCAAGGTGATCCAGGAAGCTCAAGATTCTTTCTAAGTCTTGAAGACAACATATTTCGCATTTTTGGTGGAGATCGCATAGAGGGTTTGATGAGAGCATTTAGAGTTGAAGACTTACCAATAGAATCAAAAATGCTTACAAAAGCATTGGATGAGGCTCAGAGGAAGGTGGAAAACTACTTTTTTGAGATTAGGAAACAACTATTTGAGTTTGATGAAGTCCTCAATAGCCAACGTGATCGTATTTATACAGAGCGCAGGCGTGCTCTGGAAGCTGATAATCTTCAACCTCAAATGATAGAGTATGCAGAACTTACCATGGATGATATTCTAGAGGCAAACATTAGTCCAGAAACTCCAAAAGAAAATTGGAATCTTGACGCTCTTGTTGCAAAATTACAGCAGTACTGTTATTTGTTAAATGATTTGACACCTCAAGTGCTAGCAGAAAAGTGCAGCAGCTATGATGACCTGCGGGAATATCTTCGACTTCGTGGTCGGGAAGCATACTTG

Fln Alignment:

AllPineV4_c30792___PLRKTWKVKETLFPCKLSQDSLSLVEDAVQMAVRTWGKRSLTELQAEDRLSYACEKGPIQDEVLAKLRNAFEAIVCEYKIYTEEEKNKVITAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIEGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFEIRKQLFEFDEVLNSQRDRIYTERRRALEADNLQPQMIEYAELTMDDILEANISPETPKENWNLDALVAKLQQYCYLLNDLTPQVLAEKCSSYDDLREYLRLRGREAYL
Q36795_______________PPMKTWKVKETLFPCKLSQKNAKLVDEAVQLAVKTWGQRSLSELEAEERLSYSCEKGPAQDEVIAKLRHAFLEVAKEYKTFTDEEKNKVVLAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRVFGGDRIQGLMRAFRVEDLPIESKMLTRALDEAQRKVENYFFDIRKQLFEYDEVLNSQRDRVYVERRRALESDNLESLLIEYAELTMDDILEANIGSDAPKENWDLEKLIAKLQQYCYLLNDLTPELLSNNCSTYEDLQDYLRRCGREAYL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
342	20		80		0.995493
347	80		20		0.995493
408		20		80	0.995493
409	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain