SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36478

Length: 989 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36478 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative anion transporter 5 [Arabidopsis thaliana] sp\|Q9FKV1.1\|ANTR5_ARATH RecName: Full=Probable anion transporter 5; AltName: Full=Phosphate transporter PHT4;6; Flags: Precursor dbj\|BAB10122.1\| Na+-dependent inorganic phosphate cotransporter-like prote	-	-	3.0e-30	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	major facilitator superfamily expressed	-	-	7.72341e-35	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	7.72341e-35	84%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	7.72341e-35	84%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	7.72341e-35	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
314		40		60	1.0
355		66	33		1.0
545	50			50	1.0
660	80	20			0.995497
662		20		80	0.995497
663	80			20	0.995497
664		75		25	0.996479
666	25	50		25	0.995544
668	66	33			0.997459
671		66		33	0.997459

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain