SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36462

Length: 298 nt

UniGene Fasta

>sp_v2.0_unigene36462
TGCATGATCTTGTACTTACTCACACGGACTTAAAGCCCGAGAATATTCTTCTTGTGTCATCGGATTATATAAAGATACCTGATAAGATCCAGGAAGACATTACATGCGTGTGCCTGTGTCAAGTGCAATTAAACTAATAGATTTTGGGAGTGCCACATATGAAAGCCAACACCATTGCTCAGTTGTTTCCACCAGACATTACCGTGCACCTGAGGTCTTGGATGGAGTTATCCTTGCGATCTGTGGAGTGTTGGCTGCATTCTAGTGGAATTGTGCTTGGTGTGTCAATATACTACAT

Ace file of the UniGene sp_v2.0_unigene36462

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase [Arabidopsis thaliana]	-	-	6.0e-28	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	serine threonine-protein kinase afc1	-	-	3.7488e-30	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferrochelatase.	EC:4.99.1.1	-	3.7488e-30	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		3.7488e-30	78%
Blast2go	Metabolic pathways	01100		3.7488e-30	78%
Blast2go	Biosynthesis of secondary metabolites	01110		3.7488e-30	78%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	3.7488e-30	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	3.7488e-30	78%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	3.7488e-30	78%
Blast2go	heme biosynthetic process	GO:0006783	Biological Process	3.7488e-30	78%
Blast2go	mRNA processing	GO:0006397	Biological Process	3.7488e-30	78%
Blast2go	ferrochelatase activity	GO:0004325	Molecular Function	3.7488e-30	78%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	3.7488e-30	78%
Blast2go	protein binding	GO:0005515	Molecular Function	3.7488e-30	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.7488e-30	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.7488e-30	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Overlapping hits, possible frame ERROR between 107 and 92, and overlapping frame ERROR between 229 and 214, Distance to subject end: 117 aas, your sequence is shorter than subject: 99 - 459

Fln protein: HDLVLTHTDLKPENILLVSSDYIKIPDKIxxxxxxxVPVSSAIKLIDFGSATYESQHHCSVVSTRHYRAxxxxxxxxPCDLWSVGCILVELCLVCQYTT

Protein Length: 100

Fln nts: TGCATGATCTTGTACTTACTCACACGGACTTAAAGCCCGAGAATATTCTTCTTGTGTCATCGGATTATATAAAGATACCTGATAAGATCxxxxxxxxxxxxxxxxxxxxxGTGCCTGTGTCAAGTGCAATTAAACTAATAGATTTTGGGAGTGCCACATATGAAAGCCAACACCATTGCTCAGTTGTTTCCACCAGACATTACCGTGCACCxxxxxxxxxxxxxxxxxxxxxTCCTTGCGATCTGTGGAGTGTTGGCTGCATTCTAGTGGAATTGTGCTTGGTGTGTCAATATACTACAT

Fln Alignment:

AllPineV4_c30667___HDLVLTHTDLKPENILLVSSDYIKIP------DKIQEDxxxYMRVPVSSAIKLIDFGSATYESQHHCSVVSTRHYRAPEVLDxxGWSYPCDLWSVGCILVELCL
B8LL66_______________HHLHLIHTDLKPENILFASSEYKKVPYYKNGLKRLSQDxxxYMRLPKSTAIKLIDFGSATFEDQNHSSIISTRHYRAPEVILxxGWSYPADVWSIGCILVELCV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain