SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36452

Length: 339 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene36452
AATGTGGAAATAAATTTTTCCCAGTATGGAAGGAAAGGCATCAGGTTAGGCTTACTATGACAAGCAGAGGTCCAGGGTTCCGTATGCCACCTCCATATTCAATTGTAATTCAGGAATCTGAGATGGGCTCGTGGCACATACCCATAGTGGGCGGAGATGACATTGAGACCCCAAGAATCTGGATGTGTATTACAAGGCCTAAACAGATTGAGCTTGAAAAGAGCAACATTCCTGCATCTTACGAAAGGAGTGCTCAGAGTTTCTCGCCACTCTCAGCTTTTAAAATTACTCGTGGAGAAGCAATTGATGCAGCAAACATTCATATGAAAATAAGACATT

Ace file of the UniGene sp_v2.0_unigene36452 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	3.3387e-28	74%

Source	InterPros	Term	Type	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q66GI4

Fln msg: STOP codon was not found. Distance to subject end: 43 aas, your sequence is shorter than subject: 112 - 572

Fln protein: CGNKFFPVWKERHQVRLTMTSRGPGFRMPPPYSIVIQESEMGSWHIPIVGGDDIETPRIWMCITRPKQIELEKSNIPASYERSAQSFSPLSAFKITRGEAIDAANIHMKIRH

Protein Length: 113

Fln nts: AATGTGGAAATAAATTTTTCCCAGTATGGAAGGAAAGGCATCAGGTTAGGCTTACTATGACAAGCAGAGGTCCAGGGTTCCGTATGCCACCTCCATATTCAATTGTAATTCAGGAATCTGAGATGGGCTCGTGGCACATACCCATAGTGGGCGGAGATGACATTGAGACCCCAAGAATCTGGATGTGTATTACAAGGCCTAAACAGATTGAGCTTGAAAAGAGCAACATTCCTGCATCTTACGAAAGGAGTGCTCAGAGTTTCTCGCCACTCTCAGCTTTTAAAATTACTCGTGGAGAAGCAATTGATGCAGCAAACATTCATATGAAAATAAGACATT

Fln Alignment:

AllPineV4_c30637___GNKFFPVWKERHQVRLTMTSR-GPGFRMPPPYSIVIQESEMGSWHIPIVGGDDIETPRIWMCITRPK
Q66GI4_______________GNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
59	66			33	0.997461
60	66			33	0.997461
100	75		25		0.996473
301		16	66	16	0.988813
304	20			80	0.995493
315	75		25		0.996473
316		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain