SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36409

Length: 415 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene36409
TTGGCATCATTTACACCTGCAGGGCAGCCACCAAAAATATTATGGGGTAACTATGGAGTTGTGGTCAAAGGTGGTCTCAATGATTATACCTTTTGTCAGTTCTGCGAGAAGCCTAAGTCAGCACAGACACATCATTGTCGTTCATGTAAAACCTGTGTGCTGGATATGGATCACCACTGCCCCTTTATTGGAAACTGTGTTGGAGCAGCGAACCATCATCACTTCATCACCTTCCTCTTCTTTGCTCTAATTAGTAATATCTATGTACTATTAGTGTCAACTTATGCAGGTTTGTGGATATGGCCAACTTTCTTCTATGTTCCAATTAACCTCACATCTAAATTCAGGTCAACCAATCTAGTTCACCTTGTCAGAGCATTCATAGATGCTTTGATGACCAGTTCTGTTGTTTTAT

Ace file of the UniGene sp_v2.0_unigene36409

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative S-acyltransferase [Arabidopsis thaliana] sp\|Q9LIH7.1\|ZDHC7_ARATH RecName: Full=Probable S-acyltransferase At3g18620; AltName: Full=Probable palmitoyltransferase At3g18620; AltName: Full=Zinc finger DHHC domain-containing protein At3g18620 dbj\|BAB	-	-	8.0e-30	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	probable s-acyltransferase at3g18620-like	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMN6

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 138 - 284

Fln protein: LASFTPAGQPPKILWGNYGVVVKGGLNDYTFCQFCEKPKSAQTHHCRSCKTCVLDMDHHCPFIGNCVGAANHHHFITFLFFALISNIYVLLVSTYAGLWIWPTFFYVPINLTSKFRSTNLVHLVRAFIDALMTSSVVL

Protein Length: 139

Fln nts: TTGGCATCATTTACACCTGCAGGGCAGCCACCAAAAATATTATGGGGTAACTATGGAGTTGTGGTCAAAGGTGGTCTCAATGATTATACCTTTTGTCAGTTCTGCGAGAAGCCTAAGTCAGCACAGACACATCATTGTCGTTCATGTAAAACCTGTGTGCTGGATATGGATCACCACTGCCCCTTTATTGGAAACTGTGTTGGAGCAGCGAACCATCATCACTTCATCACCTTCCTCTTCTTTGCTCTAATTAGTAATATCTATGTACTATTAGTGTCAACTTATGCAGGTTTGTGGATATGGCCAACTTTCTTCTATGTTCCAATTAACCTCACATCTAAATTCAGGTCAACCAATCTAGTTCACCTTGTCAGAGCATTCATAGATGCTTTGATGACCAGTTCTGTTGTTTTAT

Fln Alignment:

AllPineV4_c30509___KGGLNDYTFCQFCEKPKSAQTHHCRSCKTCVLDMDHHCPFIGNCVGAANHHHFITFLFFALISNIYVLLV
B8LMN6_______________KGG--DLRYCQKCGQYKPPRAHHCRVCKRCVLRMDHHCVWINNCVGHENYKAFFLFVLYVVLACIYALVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain