SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36369

Length: 586 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36369 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone H4 [Theileria parva strain Muguga] ref\|XP_764313.1\| histone H4 [Theileria parva strain Muguga] ref\|XP_953319.1\| histone H4 [Theileria annulata strain Ankara] ref\|XP_953321.1\| histone H4 [Theileria annulata strain Ankara] emb\|CAI76694.1\| histone H4	-	-	3.0e-20	100%
FL-Next	sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h4	-	-	3.54752e-20	84%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
181		40		60	1.0
250		55	44		1.0
260		50		50	1.0
356	85		14		0.993533
359	85			14	0.993533
360	85		14		0.993533
362		14	85		0.993533
364			14	85	0.993533
365	85	14			0.993533
366	85	14			0.993533
368	14			85	0.993533
373	71	14	14		0.984338
376	85		14		0.993533
377	14		85		0.993533
379		14	14	71	0.984338
382	25	75			0.996473
388	20			80	0.995499
389		20		80	0.995499
390			20	80	0.995499
391	20			80	0.995499
416		75		25	0.996479
421		66	33		0.997452
422	33	66			0.997452
424	33			66	0.997452
428	33			66	0.997452
429	25	75			0.996476
430			25	75	0.996479
431			25	75	0.996479
433	75	25			0.996477
435		25	75		0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain