SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36335

Length: 695 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36335 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gamma-soluble NSF attachment protein [Arabidopsis thaliana] sp\|Q9SPE5.1\|SNAG_ARATH RecName: Full=Gamma-soluble NSF attachment protein; Short=Gamma-SNAP; AltName: Full=N-ethylmaleimide-sensitive factor attachment protein gamma gb\|AAF01285.1\|AF177990_1 gamm	-	-	4.0e-21	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	gamma-soluble nsf attachment protein	-	-	1.4013e-41	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.4013e-41	77%

Source	InterPros	Term	Type	Identity
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
281	25		75		0.996474
489	20	80			0.995494
490			33	66	0.997452
497	80		20		0.995493
502	25			75	0.99649
504			25	75	0.99649
506	25		75		0.996476
507	25			75	0.996474
508	25			75	0.996474
509		75	25		0.996474
513	25		75		0.996476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain