SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36316

Length: 868 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36316

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T7D7_VITVI	-	-	8.0e-40	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Enolpyruvate transferase domain	IPR001986	-	0.0	-
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
483	10	90			0.90298
495		12		87	0.992554
509	87		12		0.992554
513			12	87	0.992554
515	87		12		0.992554
526		12		87	0.992554
539	11			88	0.923564
554	88		11		0.991528
557	88	11			0.991528
616		62	37		1.0
644	66		16		0.988813
657	50		50		1.0
674	16			83	0.994512
677			83	16	0.994512
679			16	83	0.994512
680	16	83			0.994512
683	16			83	0.994512
684		16		83	0.994512
685	16		83		0.994512
697	20		80		0.995493
805	66			33	0.997464
817	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain