SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36239

Length: 1143 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36239 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter I family member 17 n=3 Tax=Arabidopsis RepID=AB17I_ARATH	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	abc transporter i family member 17	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Binding-protein-dependent transport systems inner membrane component	IPR000515	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Conserved hypothetical protein CHP00725	IPR005268	-	-
Sma3	Phosphate transport system permease protein 1	IPR005670	-	-
Sma3	Bacterial extracellular solute-binding, family 1	IPR006059	-	-
Sma3	Phosphoenolpyruvate carboxykinase, GTP-utilising	IPR008209	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Transport-associated OB, type 2	IPR013611	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site	IPR018091	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg:

Fln protein: MELNDFGDEQQLLRSIDEDDLEEGVVGDGDRHPKIRVKNLWRTTEQGTSLLSGVSVDIWKGTVVGVIGPSGSGKSTLLRALNRLWEPSVDSVFLDNDDITNLDVLALRRRVGMLFQTPALFEGSVADNIRYGPALRGEKLSDEKVVEYLGLADLDSSLAARAASGLSVGQAQRVALARALANNPEVLLLDEPTSALDPISTEHIEESIGKLRREKGMTIIMVSHSIKQIQRIADLVFVLVDGQIVDSLKPDQLCNANHPTARRFLELSS*

Protein Length: 271

Fln nts: GGACACGAAAAGCTTTGAGTAGACCACATGTAACCTGCCCTTCGACTATTTAGCAGAATTTGCCTCTTGGATTGCTGATTGCAGGTGGCTGACTCTGGTTGTGTTGCAGATCAATTCTATCC_-_ATGGAACTCAATGATTTTGGAGATGAGCAGCAGCTGCTGCGCAGCATCGATGAGGACGACCTGGAGGAAGGGGTTGTGGGCGATGGTGATCGCCATCCGAAGATAAGGGTGAAAAATCTTTGGAGGACGACGGAGCAGGGGACGAGCCTTCTGTCGGGAGTTTCGGTCGACATATGGAAGGGGACGGTGGTGGGAGTAATAGGGCCGAGCGGGAGCGGAAAGTCGACATTGCTGAGGGCACTGAACAGGCTCTGGGAACCGTCCGTCGATTCCGTCTTCCTCGACAATGACGACATCACTAACCTCGACGTGCTCGCCCTCCGACGCCGTGTGGGCATGCTCTTCCAGACGCCAGCCCTCTTCGAAGGAAGCGTCGCGGATAACATAAGGTACGGGCCGGCGCTCCGCGGGGAGAAATTGTCGGACGAGAAGGTGGTTGAGTATTTGGGCTTGGCGGATTTGGACTCCTCGCTGGCCGCCAGAGCTGCTAGCGGTTTGTCCGTGGGGCAGGCGCAGCGGGTGGCCCTGGCCAGGGCTCTGGCCAACAACCCCGAGGTACTACTGCTGGACGAGCCGACGAGCGCCCTGGATCCCATATCGACTGAGCACATCGAGGAGTCGATCGGGAAGCTGAGGAGGGAGAAGGGGATGACAATTATCATGGTTTCGCACAGCATCAAACAGATTCAAAGAATCGCCGACCTCGTCTTTGTGTTGGTCGATGGGCAGATTGTGGACTCTCTGAAACCCGACCAGCTCTGCAATGCAAACCATCCCACGGCTCGCAGGTTTCTGGAATTGAGCTCCTAA___TTTTCATGAATTCTGCTGGTGGACGACATGGCGCGACTGGGAATTTTCTGTTAAGGTGTCGAGTCAGAAAGCATTTGCTTTTCCTGCGCGGCAATGTCAAAAGCATTTCCAATTTCTTTCCTTTAATGGCCATATAATGGAGTGTAAGATAAGCATCCGCGCTTTAAAGGTTGTAAAGTGTGGAATATTTAATTTTATTATTATTATCAAA

Fln Alignment:

AllPineV4_c29940___HPKIRVKNLWRTTEQGTSLLSGVSVDIWKGTVVGVIGPSGSGKSTLLRALNRLWEPSVDSVFLDNDDITNLDVLALRRRVGMLFQTPALFEGSVADNIRYGPALRGEKLSDEKVVEYXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXNPEVLLLDEPTSALDPISTEHIEESIGKLRREKGMTIIMVSHSIKQIQRIADLVFVLVDGQIVDSLKPDQLCNANHPTAR
D5ADF3_______________HPKMSVRDLRRKSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPSADSVFLDYHDITKLDVLALRRRVGMLFQTPALFDGNVADNIKYGPALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQHIEESIGKLKRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKPDQLSNANHPMAR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
54			33	66	0.998869
177	40	60			1.0
401		75		25	0.996474
413	25		75		0.996478
727	75	25			0.996473
728		25		75	0.996473
729	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
5	17	ATA ATA ATA ATA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain