SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36217

Length: 995 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36217 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin_tail_1 multi-domain protein	-	-	1.0e-14	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%
Blast2go	dna repair protein	-	-	5.09778e-41	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX7

Fln msg: STOP codon was not found. Distance to subject end: 84 aas, your sequence is shorter than subject: 331 - 528

Fln protein: QLEKANTVECLQNEVQRLTEQMSSTYDEKESMATKALIEASELRAEKMKMEDALKQIQVKVRHCEMELASVRQDHESKVQLLIHQHNASKIKEEEMNVKLEDMKLGEASSGERIQDLEKMIKHAETENQKLKDEHDALMSQAREAVNLKAEMDILKSTIEDVGREKSRLESSLNFTDIELGRVKAEKASLIEKLETMKAAVSEQEEIKRSKVALEEKLLRLQSELNTKEASIAYETGQKNESIRLKRQNSQFQRKLQDLQEEKEESQSKVKLLEEELQLKADALSKAEQKYFGMSMSKVEHTSPSRNSKEVAELHEKLRFIEGELETVTKE

Protein Length: 332

Fln nts: TTCAGTTGGAAAAAGCAAACACAGTGGAATGTTTACAAAATGAGGTGCAGCGCCTTACAGAGCAGATGTCATCAACATATGATGAGAAAGAGAGTATGGCCACTAAGGCTCTAATTGAAGCATCAGAACTTCGAGCAGAAAAGATGAAAATGGAAGATGCTCTTAAGCAAATTCAAGTGAAAGTTAGACACTGTGAAATGGAGCTTGCATCTGTGAGGCAGGACCATGAAAGTAAGGTGCAGCTGTTGATTCATCAACACAATGCTTCCAAAATAAAGGAAGAAGAGATGAATGTTAAGCTAGAGGATATGAAGCTTGGTGAGGCAAGTTCTGGGGAAAGAATTCAAGACCTGGAAAAGATGATTAAACATGCTGAGACCGAGAATCAAAAACTCAAAGATGAGCATGATGCTCTTATGAGTCAGGCCCGTGAAGCAGTCAATCTAAAGGCTGAAATGGACATTCTGAAAAGCACAATTGAGGATGTTGGAAGAGAAAAGTCTAGATTGGAAAGTTCTCTGAACTTCACAGACATCGAACTTGGAAGAGTAAAGGCTGAGAAAGCTTCATTAATAGAAAAACTGGAGACCATGAAGGCAGCTGTTTCTGAACAGGAAGAAATCAAGCGCTCTAAGGTAGCTTTGGAAGAGAAGCTTCTTCGCTTACAGTCAGAACTCAACACGAAGGAGGCATCAATTGCTTATGAAACTGGGCAGAAGAATGAGTCAATAAGACTTAAAAGGCAAAACAGTCAATTTCAACGCAAGCTTCAGGATCTACAGGAGGAAAAAGAGGAGTCTCAAAGCAAAGTAAAATTACTTGAGGAAGAGCTACAACTAAAGGCAGATGCTTTATCCAAGGCTGAGCAGAAATATTTTGGAATGTCAATGAGTAAAGTGGAACACACATCACCTTCTCGGAATTCAAAAGAGGTGGCTGAACTCCATGAGAAGCTGCGGTTTATTGAGGGTGAATTGGAAACTGTCACAAAGGAG

Fln Alignment:

AllPineV4_c29882___VQRLTEQMSSTYDEKESMATKA--LIEASELRAEKMKMEDALKQIQVKVRHCEMELA-SVRQDHESKVQLLIHQHNASKIKEEEMNVKLEDMKLGEASSGERIQDLEKMIKHAETENQKLKDEHDALMSQAREAVNLKAEMDILKSTIEDVGREKSRLESSLNFTDIELGRVKAEKASLIEKLETMKAAVSEQEEIKRSKVALEEKLLRLQSELNT
B8LQX7_______________IKDASTKLGEQRDENEMLRQKLKQFSEQYELREQQFKQQLKKKTLELQLAEVKLQQQLEVSCQEQAKVQLYTEQ--ISQLLETEKNLRLQ-----LAADGEKFQQFQETL----TKSNEVFE-------------SFKKEMEKMAKTIKDLNRENSFLKKKCEKTDVSLIELVDEREKVKKQLEKTKNQKEKLESLCRSLQAERKQ----QSDINT

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
298	12		87		0.992554
310	12	87			0.992554
312		87		12	0.992554
316		71		28	1.0
318		33		66	1.0
336	85		14		0.993533
470		50		50	1.0
471	50		50		1.0
472	50			50	1.0
474	50			50	1.0
475	50		50		1.0
476		50		50	1.0
477		50	50		1.0
481			50	50	1.0
482			50	50	1.0
547		66	33		0.997452
848	33		66		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain