SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36215

Length: 828 nt

Origin of reads: Inia v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36215

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Inositol 5-phosphatase n=2 Tax=Dictyostelium discoideum RepID=Q54W40_DICDI	-	-	3.0e-38	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ8

Fln msg: Separated hits, possible frame ERROR between 543 and 596, and possible frame ERROR between 778 and 780, Distance to subject end: 191 aas, your sequence is shorter than subject: 277 - 571

Fln protein: NMHVKDLLEQGTGEVELEPRWYDLYSKDLKKKLVGKIRMHIVVGRAEPEQRIRAFIGTWNVGNSSPPADLSAWIPQGAPYEIISIGTQECDYPPRSPYTDCGKDWLETCKNHVGGRYRVVHATSIGQMRLVVFVRDDAEKAVSHVHSGTEATGVGHVMPNKGGVCISFKVCVSLTGINENxxxxxxxxxxxxxxxxxxxQFWDTGLCFVNSHFAAHDGHSETRNSNYKEIVGELRVGSQNVDLLNQFNHVFWMGDLNYRxFDFTGTEERPMTPQRRF

Protein Length: 278

Fln nts: AATATGCATGTCAAAGATCTCCTGGAGCAAGGTACTGGTGAAGTTGAGCTGGAGCCCCGGTGGTATGACCTTTATTCTAAAGACCTGAAGAAAAAGCTTGTAGGGAAGATTCGAATGCATATTGTAGTAGGCAGGGCTGAGCCAGAGCAAAGGATACGTGCTTTCATAGGAACCTGGAATGTTGGGAATTCCAGTCCGCCAGCGGACCTATCTGCATGGATTCCACAGGGTGCTCCTTATGAAATAATTTCTATTGGAACACAGGAGTGCGATTATCCACCAAGATCGCCATATACTGACTGTGGAAAAGACTGGTTGGAAACCTGCAAGAATCATGTTGGTGGTCGATACAGGGTAGTCCATGCCACTTCAATAGGGCAGATGCGCCTAGTGGTTTTTGTACGGGATGATGCAGAGAAAGCAGTTTCCCATGTTCACAGTGGAACTGAAGCCACAGGTGTTGGACATGTTATGCCAAATAAAGGAGGTGTTTGCATTTCTTTTAAGGTATGCGTTAGTTTGACTGGAATTAATGAAAATTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAGTTCTGGGACACAGGCCTTTGCTTTGTGAACAGCCATTTCGCTGCACATGATGGCCATAGTGAGACGCGGAATAGTAATTACAAAGAAATAGTAGGAGAGTTGCGAGTCGGATCACAAAATGTGGACCTTTTGAATCAGTTCAATCATGTATTTTGGATGGGAGATCTAAATTATAGAxxxTTTGACTTTACTGGAACAGAAGAAAGACCCATGACACCACAGAGGAGATTCT

Fln Alignment:

AllPineV4_c29865___NMHVKDLLEQGTGEVELEPRWXXXXXXXXXXXXVGKIRMHIVVGRAEPEQRIRAFIGTWNVGNSSPPADLSAWIPQGAPYEIISIGTQECDYPPRSPYTDCGKDWLETCKNHVGGRYRVVHATSIGQMRLVVFVRDDAEKAVSHVHSGTEATGVGHVMPNKGGVCISFKVC-VSLTGINENFxxxxxxxxxxxxxxxxxxQFWDTGLCFVNSHFAAHDGHSETRNSNYKEIVGELRVGSQNVDLLNQFNHVFWMGDLNYRLxDFTGTEERPMTPQRRF
B8LLZ8_______________NMHVKDLLEQGTGEVELEPKWYDLYSKDLKKKLAGKIQMHIVVGTAEPEQRIRAFVGTWNIGNSSPPEDLSAWIPKGAPYEIISIGTQECDYQPRSPYTECGKDWLETCKNHIGSRYRVVHATSRGQMRLGVFVRDDAEKAVSHVHSGSEATGVGHVMANKGGVCISFKFWDTGLCFVNSHFxxxxxxxxxxxxxxxxxxKFWDTGLCFVNSHFAAHDGHCETRNSNYREIVRELRVGVQNIDLLNQFNHVFWMGDLNYRLxDFTGMEENPISPQRRF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
236		66		33	0.997452
393		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain