SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36194

Length: 970 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36194

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SMZ3_PHYPA	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	k+ uptake permease 9	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	0.0	64%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	FAR1 DNA binding domain	IPR004330	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: No stop codon before M and low homology subject,

Fln protein: MYVWHYVHVKRYAYELEHKVSTEFMLSLGSSLSVTKVPGIGLLYTELAQGVPAIFGHFVRNLPAIHSVLVFVCVKYLPVNTVPAAERFLFRRIGPKEQKMYRCIARYGYRDTRTGNVEFENQLLEFLKDFISSDNIYTYHLNNQPESEGNNCDGAESIIDIGAVSENAVMNACTMESFKEELDFLEDAKESGVVYLLGDSEVVASKDSSLFKRFIVNYAYDFLRRNCRKGQAALEIPHRNLLQVGMTYYI*

Protein Length: 252

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCAGCAGTGTTGTACAAATTTCCTGAAGGGGGATACCTTCCATTAGCTTTTGCTGCAGTATTGTTACTTGTG_-_ATGTATGTGTGGCATTATGTCCATGTCAAGAGATATGCGTATGAGCTGGAGCATAAGGTGTCAACAGAATTCATGTTAAGCTTGGGTTCGAGTCTGAGTGTGACCAAAGTTCCTGGGATTGGGCTTCTGTACACAGAACTAGCACAAGGAGTTCCAGCAATTTTTGGACATTTCGTGAGAAATCTTCCTGCTATACATTCTGTCCTTGTATTCGTCTGTGTCAAGTATCTTCCTGTGAATACAGTTCCAGCTGCAGAACGCTTTCTATTTCGGCGTATTGGTCCCAAGGAACAAAAAATGTACAGATGCATTGCTAGGTATGGTTATAGGGACACACGGACTGGGAATGTGGAGTTTGAGAACCAGTTACTTGAATTCCTGAAAGACTTTATATCATCTGACAACATATACACATATCATCTCAATAACCAACCTGAGAGTGAAGGGAATAATTGTGACGGTGCAGAGAGTATAATTGATATTGGGGCGGTCTCTGAAAATGCAGTCATGAATGCCTGCACCATGGAAAGCTTCAAAGAGGAGCTGGATTTCTTAGAAGATGCAAAGGAATCAGGTGTGGTATATTTGCTAGGAGATAGTGAGGTTGTTGCAAGCAAAGATTCATCCTTGTTTAAAAGATTCATAGTGAACTATGCATATGACTTTCTGAGGAGGAATTGCAGAAAGGGACAAGCAGCTTTGGAGATCCCCCACAGAAATCTTTTGCAAGTTGGCATGACCTACTATATCTGAACTATATACAGATCTTTTGCCCTAGTATATAACGTGACAAGTATAAGCCATGTACATGTGTAATGTTGAAGAAAGCCTTTGAATTACAAACTTTAGTTATCCAAATACAGCTCTATCT

Fln Alignment:

AllPineV4_c29803___LYTELAQGVPAIFGHFVRNLPAIHSVLVFVCVKYLPVNTVPAAERFLFRRIGPKEQKMYRCIARYGYRDTRTGNVEFENQLLEFLKDFISSDNIY-----TYHLNNQPESEGNNCDGAESIIDIGAVSEN------AVMNACTMESF-------------------------------KEELDFLEDAKESGVVYLLGDSEVVASKDSSLFKRFIVNYAYDFLRRNCRKGQAALEIPHRNLLQVGMTYYI
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
433		66		33	0.997452
434	66		33		0.997452
435		66	33		0.997452
436	66		33		0.997452
581		25		75	0.996473
590	33		66		0.997452
692	60		40		1.0
764		80		20	0.995493
781	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain