SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35979

Length: 830 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35979

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] dbj\|BAB02197.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAE98825.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE77150.1\| O-fucosyltransferase family protein [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3		IPR004348	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
655	20	80			0.995493
731		75	25		0.996473
735		25		75	0.996473
736			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain