SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35908

Length: 1882 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35908

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	56%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	polygalacturonase qrt3	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	71%
Blast2go	Starch and sucrose metabolism	00500	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	71%
Blast2go	pollen exine formation	GO:0010584	Biological Process	71%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49432

Fln msg: your sequence is longer than subject: 538 - 481

Fln protein: MGALGTFFVLVVMAFLGILSNVDCHMILRSCKPGAHSRSLSQSRMESRDSPVINVPKYVSRAEAKRISIARWKKAQSLAAAPRPHNTTVPSNGRLFYVTDYGADPTGATDSTQALLAAINGAFNVTTIEQMMPGVPDLGGVEIHLEGGNYLISGPLRLPASRGGNVLIHGGTLRASENFPKDRYLIELWSSTDAKLNGNLNSDELATAITGMDLSAEYSYEYVTLRNLMLDANFSGGGILVINSLRTNIDSCYISHFMSSGIMVQGGHETLIHNSFLGQHITAGGSPIERQFSGVAINLMGNDNAVTDVVIFSAAVGILLSGQANIITGVHCYNKATGFGGVGIKLQLGGLTQTRILGSYMDYTGIVAEDPVQLDIVNSFFLGDAYILLKSSQRKMISGVNIVNNMFAGSGKGVNIVQLDGQFQSIKQIVIDGNNVRGMALKSTVARGTVKGNGTTWTIDFSPVLLFPNHIQHVQYSFYTSDASFPRHALRNVSQNIVVIEADTQVSATVAVQVDQSATFVRAVRFIPKRRALWITP*

Protein Length: 539

Fln nts: ATATAGAGCACTTCAACATTCAGAATAAGAAAGATTGGAAAGATTGCTCAGCTCCATTGGGATTTCTTTCTGCAATGGCCTTCACGTCGtGcCaTTctCTTgTGCActaATATTTAAAGGTATCATAATCTGGCTTTTGTCTATATTTCGTTTTTAGTAGCCTGGAATTAGAAGAGGAAGTCTCAACCTGCAAAAGGAGTA_-_ATGGGTGCCCTAGGGACTTTTTTCGTCTTGGTTGTAATGGCGTTTCTTGGGATTTTATCCAATGTGGATTGTCACATGATTTTGAGATCATGCAAGCCTGGTGCTCACTCGAGATCCCTCTCGCAATCAAGAATGGAGAGTCGCGATTCTCCGGTCATCAATGTTCCCAAATATGTCAGTCGAGCAGAGGCGAAGAGAATTTCGATTGCTCGCTGGAAGAAGGCTCAGTCGCTGGCTGCGGCGCCAAGACCTCACAACACCACGGTCCCATCGAATGGCCGCTTATTCTATGTTACAGACTATGGCGCGGATCCAACCGGAGCCACAGACAGCACTCAGGCCCTGTTGGCTGCCATCAATGGGGCCTTCAATGTAACTACAATCGAACAAATGATGCCAGGTGTACCTGACCTCGGAGGCGTGGAGATTCATCTCGAAGGAGGAAATTATCTCATCAGCGGACCTCTGCGGCTGCCTGCAAGCAGAGGCGGCAATGTTTTGATTCACGGGGGAACTCTGCGGGCTTCTGAGAATTTCCCAAAAGATCGGTACTTGATCGAGCTATGGTCCTCGACTGATGCGAAGCTCAACGGGAACCTCAATAGCGACGAGCTCGCGACCGCCATCACGGGCATGGACTTGTCTGCTGAGTACTCGTACGAATATGTTACTCTGCGGAATTTGATGTTAGATGCGAATTTTTCAGGCGGGGGTATTCTAGTCATCAATTCCCTTAGAACCAACATAGATAGCTGCTATATCTCGCATTTCATGTCGTCTGGCATCATGGTTCAGGGCGGGCACGAGACACTCATCCATAATTCCTTTCTTGGACAGCACATTACCGCGGGTGGAAGCCCCATTGAGAGGCAATTCAGTGGCGTTGCTATAAATCTCATGGGCAACGACAACGCTGTAACAGATGTGGTCATTTTCTCGGCTGCTGTGGGGATTTTGTTGAGCGGTCAGGCCAATATAATAACGGGAGTcCACTGCTATAATAAGGCCACGGGCTTTGGAGGAGTTGGAATCAAACTACAGCTCGGTGGATTGACTCAGACTAGGATTCTCGGTTCTTACATGGACTACACAGGCATTGTTGCAGAAGATCCCGTGCAGCTTGATATTGTTAATAGTTTCTTTTTAGGCGATGCCTACATATTGCTGAAATCGTCTCAGAGGAAAATGATATCCGGTGTCAATATTGTAAACAATATGTTTGCTGGCTCTGGGAAGGGCGTGAACATTGTTCAGTTGgACGGACAATTTCAATCCATCAAGCAGATCGTTATTGACGGGAACAATGTGCGGGGAATGGCGCTTAAATCGACCGTGGCTCGAGGCACAGTGAAGGGTAACGGGACCACGTGGACCATAGATTTTAGTCCCGTCCTGCTCTTCCCGAACCATATTCAGCATGTTCAGTACTCTTTCTATACTTCTGATGCATCATTTCCCAGGCATGCTCTCAGAAATGTCTCTCAGAACATAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACAGTGGCAGTACAGGTAGACCAGAGTGCCACTTTTGTCAGGGCAGTGCGATTTATTCCTAAGaGACGGGCTCTCTGGATTACTCCATAG___AGATTTTGCTAGATGTGGTTGCAGGGCAACAATGCACAGGAAAATCCCAATGCATTTAATTCCTTTC

Fln Alignment:

AllPineV4_c28848___VSRAEAKRISIARWKKAQSLAAAPRPHNTTVPSNGRLFYVTDYGADPTGATDSTQALLAAINGAFNVTTIEQMMPGVPDLGGVEIHLEGGNYLISGPLRLPASRGGNVLIHGGTLRASENFPKDRYLIELWSSTDAKLNGNLNSDELATAITGMDLSAEYSYEYVTLRNLMLDANFSGGGILVINSLRTNIDSCYISHFM-SSGIMVQGGHETLIHNSFLGQHITAGGSPIERQFSGVAINLMGNDNAVTDVVIFSAAVGILLSGQANIITGVHCYNKATGFGGVGIKLQLGGLTQTRILGSYMDYTGIVAEDPVQLDIVNSFFLGDAYILLKSSQRKMISGVNIVNNMFAGSGKGVNIVQLDGQ---FQSIKQIVIDGNNVRGMALKSTVARGTVKGNGTTWTIDFSPVLLFPNHIQHVQYSFYTSDAS-FPRHALRNVSQNIVVIEADTQVSATVAVQVDQ
O49432_______________LAEMQALKASLVR-RNLPALVSPPPTPPQAVPGP-RVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIEL-------------KDESS--------KLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSI-AGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
90		33		66	1.0
92	33	66			1.0
94	33	66			1.0
97		33	66		1.0
98			33	66	1.0
102		33	66		1.0
107	33	66			1.0
108	33			66	1.0
109	33	66			1.0
349		20		80	0.995493
355	16		83		0.994512
357		83	16		0.994512
358	83		16		0.994512
359			16	83	0.994512
459		75	25		0.996473
461	25	75			0.996473
539	66			33	0.997452
540		33	66		0.997452
1571	33		66		0.997452
1588	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain