SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35759

Length: 829 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene35759 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LysM domain-containing receptor-like kinase 7 n=1 Tax=Medicago truncatula RepID=Q6UD74_MEDTR	-	-	4.99997e-41	39%
FL-Next	tr=LysM domain-containing receptor-like kinase 7; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	39%
Blast2go	receptor-like protein kinase	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
437	14	85			0.999981
438			85	14	0.999981
483	10	90			0.902983
496	88		11		0.923564
503	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain