SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35342

Length: 900 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35342

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AAD21776.1\| putative receptor-like protein kinase [Arabidopsis thaliana] gb\|ACN59281.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC05504.1\| leucin	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	receptor protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	77%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 299 - 431

Fln protein: ILFYLRRMKPKFSKLPSHPPAAQRHTINGAGSGEAGSSLVGSHGNVVYPLWVLQKATNNFSPENLLGKGGFGSVYEGKLEDGSTVAVKRMDPELVSSKGLQEFQAEISMLGKVRHRNLVALLGYCTENNERLLVYEFMPQGTLSQHLFHWEQNGLKPLSLNSRMLIALDVAHGMQYLHNLAFKIIIHRDLKPSNILLDDELRAKVSDFGLAKLAPEDKASVETRLAGTFGYLAPEYAATGRVTTKSDVYSFGVVLMELIAGQKALDEKRSEDKVHLVPWFRHISRDQERLRAFIDPVLQ

Protein Length: 300

Fln nts: TATTCTGTTTTACTTGAGGAGGATGAAACCCAAGTTCTCAAAGCTGCCGTCGCATCCTCCGGCAGCTCAGCGGCATACAATCAATGGAGCAGGGAGTGGTGAAGCTGGTAGCAGCTTGGTTGGGTCTCATGGAAACGTCGTTTATCCTTTGTGGGTTCTTCAAAAGGCCACAAATAATTTTAGCCCTGAAAATCTGTTGGGCAAAGGAGGTTTTGGATCTGTTTATGAAGGTAAGCTCGAGGATGGTTCGACGGTTGCAGTGAAGAGAATGGATCCTGAGCTTGTGAGTAGCAAAGGACTGCAAGAGTTTCAAGCAGAGATCAGCATGCTGGGCAAGGTCCGCCATCGAAATCTTGTTGCACTCCTTGGGTATTGCACTGAGAACAATGAAAGGTTGCTCGTATATGAATTCATGCCTCAGGGCACGCTGAGCCAACACCTTTTCCATTGGGAGCAGAATGGGCTCAAGCCGCTCAGTTTGAACAGTCGGATGCTTATTGCTTTAGATGTAGCTCATGGGATGCAGTACTTACACAACCTGGCATTCAAAATTATCATTCACAGGGACTTGAAGCCTTCAAATATTCTTCTGGATGACGAGCTGCGAGCAAAAGTCTCTGATTTTGGTCTTGCAAAGCTTGCTCCCGAGGATAAAGCATCCGTGGAAACAAGATTGGCTGGCACATTTGGATATCTTGCTCCAGAGTATGCAGCCACCGGACGTGTAACTACAAAATCAGATGTTTACAGTTTTGGAGTTGTGCTTATGGAGCTGATAGCAGGCCAGAAAGCCTTGGATGAGAAGCGGTCCGAAGATAAGGTTCATCTGGTGCCATGGTTTAGACACATAAGTAGGGATCAGGAACGGCTCAGGGCATTTATAGATCCAGTACTCCAATC

Fln Alignment:

AllPineV4_c26938___LQKATNNFSPENLLGKGGFGSVYEGKLED----------GSTVAVKRMDPELVSSKGLQEFQAEISMLGKVRHRNLVALLGYCTENNERLLVYEFMPQGTLSQHLFHWEQNGLKPLSLNSRMLIALDVAHGMQYLHNLAFKIIIHRDLKPSNILLDDELRAKVSDFGLAKLAPE-DKASVETRLAGTFGYLAPEYAATGRVTTKSDVYSFGVVLMELIAGQKALDEKRSEDKVHLVPWFRHISRDQERLRAFIDPVL
B8LKY1_______________LKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPD--GLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLF---RKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
277		16		83	0.994512
475			60	40	1.0
478		80		20	0.995493
547		50	50		1.0
548	50	50			1.0
549	16			83	0.994512
552	60		40		1.0
553	60	40			1.0
671			83	16	0.994512
679	83			16	0.994512
684			83	16	0.994512
714	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain