SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35301

Length: 931 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heparanase-like protein 3 [Arabidopsis thaliana] gb\|AED93922.1\| Heparanase-like protein 3 [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	heparanase-like protein 3-like	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is shorter than subject: 247 - 381

Fln protein: SFYNLGAGVGEHLVEKILDPSYLSREASTFKSLKAILQEYGPWSSAWVGEAGGAYNSGHDLVTNAFIFSFWYLDQLGMASTYNTKSYCRQSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGTRVLSANSTGTEYLRAYAHCTKNARGVTLLLINLSRDTGISVQVSTGSGTSTDGNSKLEYHLTAKEGDLHSQTVRLNGNILEITPDGEIPSLPAVIVPAEKPILVAPLSIAFVQLPYVQFTACS*

Protein Length: 248

Fln nts: ATCATTCTACAACCTTGGGGCAGGTGTGGGTGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTCGAGAAGCATCCACATTCAAGAGTCTGAAAGCCATTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACGATCTCGTCACGAATGCTTTTATATTTAGTTTTTGGTATTTAGATCAGCTTGGCATGGCATCTACTTATAATACCAAGTCTTACTGCAGACAAAGCTTGATTGGTGGTAACTATGGCCTTTTAAACACGACGACTTATGTGCCAAATCCTGATTATTACAGTGCACTTCTCTGGCATCGACTAATGGGAACGCGTGTTCTTTCCGCAAATTCGACAGGAACAGAATATCTACGTGCTTATGCACATTGCACCAAGAATGCTAGGGGAGTCACTTTGCTCTTGATCAACTTGAGCAGGGACACCGGTATCTCTGTGCAGGTCTCTACGGGTTCTGGAACTTCCACAGACGGAAATTCTAAACTAGAATATCACTTAACAGCAAAAGAGGGTGATCTACATAGCCAGACTGTGCGCCTCAATGGGAACATTTTGGAGATAACTCCGGATGGTGAGATACCCTCTTTACCGGCGGTGATAGTACCTGCTGAGAAACCAATTCTTGTAGCCCCTCTCTCTATTGCATTCGTACAGCTTCCTTATGTTCAATTCACAGCGTGTAGCTGA___TAGGAATTGGCTGTAGATCAAAGCTACCATTTAATTGGTTATTTTAGCTGAAATTGGTTGGTTGCTATGGTTGCCAAAGAGATGTTTGATCGGCTCAATGGCACATGAATATATTGTCAGCAAATAAAAGTGTGCTGCCTTGGATACAGATTGGGATAATTCTTGCCCCTTTTTTCTAAGTTCCATCCC

Fln Alignment:

AllPineV4_c26798___FYNLGAGVGEHLVEKILDPSYLSREASTFKSLKAILQEYGPWSSAWVGEAGGAYNSGHDLVTNAFIFSFWYLDQLGMASTYNTKSYCRQSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGTRVLSANSTGTEYLRAYAHCTKNARGVTLLLINLSRDXXXXXXXXXXXXXXXXXNSKLEYHLTAKEGDLHSQTVRLNGNILEITPDGEIPSLPAVIVPAEKPILVAPLSIAFVQLPYVQFTACS
B8LM26_______________FYNLGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGTRVLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVSTGSGTSTDRNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPACS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
706	16	83			0.994512
707		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain